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gtfparse Public
Forked from openvax/gtfparseParsing tools for GTF (gene transfer format) files
Python Apache License 2.0 UpdatedJul 28, 2023 -
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dendroscope_parser Public
Very old dendroscope parser and annotator
Ruby MIT License UpdatedJun 23, 2022 -
kaiju Public
Forked from bioinformatics-centre/kaijuFast taxonomic classification of metagenomic sequencing reads using a protein reference database
C GNU General Public License v3.0 UpdatedJun 23, 2022 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJun 23, 2022 -
spreadsheet Public
Forked from zdavatz/spreadsheetThe Ruby Spreadsheet by ywesee GmbH
Ruby GNU General Public License v3.0 UpdatedJun 23, 2022 -
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gw_meta_analysis_low_muscle_strength Public archive
Analysis code and processing stages for Genome-Wide meta-analysis of low grip strength in older people.
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kerplink Public
Plink pipeline for GWAS Additive / Recessive models
MIT License UpdatedAug 25, 2018 -
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variant_parser Public
Selects possible pathogenic variants from an Alamut output
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targeted_sequencing_pipeline Public
Targeted sequencing pipeline for the Royal Devon & Exeter Molecular Genetics lab.
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bolt_parser Public
Parser to merge multiple external annotations with BOLT-LMM outputs
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virtual_parser Public
Virtual panel parser with ruleset for pathogenic variants, for use with Cellbase annotated variants
Clojure Eclipse Public License 1.0 UpdatedJul 24, 2017 -
cooccurrence_matrix Public
Basic Co-occurrence matrix testbed in Python
Python Eclipse Public License 1.0 UpdatedJul 20, 2017 -
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clinical_variant_database Public
Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioi…
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starlims_report_generator Public
Example report generator for StarLIMS
Ruby MIT License UpdatedMar 3, 2017 -
mosaic_clusterer Public
Uses SciKit Learn library's Mean Shift implementation to draw a chart of mosaic variants
Python MIT License UpdatedFeb 6, 2017 -
trio_generator Public
Example workflow to generate a trio VCF from parental data
Ruby UpdatedJan 23, 2017 -
gene_coverage_report Public
Small application to demostrate Biomart, Bio-SamTools (ruby wrapper around Samtools) and Nyaplot graphs
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simple_bash_pipeline Public
Historical version of targeted panel sequencing pipeline for Monogenic Diabetes. Originally developed as Masters in Bioinformatics project @ University of Exeter
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hgvs Public
Forked from counsyl/hgvsHGVS variant name parsing and generation
Python MIT License UpdatedJun 15, 2015 -