Englander Institute for Precision Medicine

All

25 repositories

bridge2ai-docs
Public
Python
•
MIT License
•2•0•0•1•Updated Nov 22, 2024Nov 22, 2024
bridge2ai-redcap
Public
Bridge2AI Voice | REDCap
ai redcap bridge2ai
MIT License
•3•4•0•0•Updated Nov 13, 2024Nov 13, 2024
bioinformatics
Public
Tool including several common bioinformatics software applications
docker bioinformatics
Dockerfile
•
MIT License
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
b2ai-peds-protocol
Public
1•0•0•0•Updated Aug 23, 2024Aug 23, 2024
stork-v
Public
This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.
docker ai machine-learning
Python
•2•2•0•9•Updated Jun 17, 2024Jun 17, 2024
hello-mess-nf
Public
A Nextflow pipeline to experiment with DSL2 + Zero Mess
nextflow-pipeline dsl2
Nextflow
•
MIT License
•1•4•0•0•Updated May 20, 2024May 20, 2024
rnaseq-messaging
Public
RNAseq pipeline to demonstrate use of messaging
Nextflow
•
MIT License
•0•0•0•0•Updated Dec 1, 2023Dec 1, 2023
cnn-smoothie
Public
Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images
machine-learning ai tensorflow python docker deep-learning cnn convolutional-neural-networks
Python
•
MIT License
•1•1•0•5•Updated Oct 3, 2023Oct 3, 2023
ai-biopsy
Public
Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging
docker ai machine-learning deep-learning tensorflow convolutional-neural-networks
Python
•
MIT License
•10•3•0•5•Updated Oct 3, 2023Oct 3, 2023
stork-a
Public
docker machine-learning ai
R
•
MIT License
•2•0•0•4•Updated Oct 3, 2023Oct 3, 2023
stork
Public
Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization
docker machine-learning ai ivf python deep-learning tensorflow convolutional-neural-networks
Python
•
MIT License
•3•5•0•5•Updated Oct 3, 2023Oct 3, 2023
ERVmap
Public
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
docker
Perl
•
MIT License
•14•1•0•0•Updated Sep 25, 2023Sep 25, 2023
STRIDES
Public
Supporting the Azure + NIH STRIDES initiative
MIT License
•5•0•0•0•Updated Feb 28, 2023Feb 28, 2023
pmkb-bot
Public archive
PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.
nodejs docker ai cancer azure bot-framework cancer-genomics knowledgebase cortana luis
JavaScript
•
MIT License
•0•4•2•2•Updated Jun 22, 2022Jun 22, 2022
SalmonTE
Public
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Jupyter Notebook
•
GNU General Public License v3.0
•23•0•0•0•Updated Oct 14, 2021Oct 14, 2021
bowtie2
Public
A fast and sensitive gapped read aligner
C++
•
GNU General Public License v3.0
•159•0•0•0•Updated Sep 20, 2021Sep 20, 2021
picard
Public
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Java
•
MIT License
•369•0•0•0•Updated Sep 17, 2021Sep 17, 2021
hello-nextflow
Public
An hello world pipeline to test nextflow installations.
groovy nextflow-pipelines
Nextflow
•0•0•0•0•Updated May 26, 2021May 26, 2021
CIN
Public
Python
•
MIT License
•6•5•1•0•Updated Jan 15, 2021Jan 15, 2021
omero-server-docker
Public
EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.
omero
Shell
•27•0•0•0•Updated Nov 20, 2020Nov 20, 2020
beacon
Public
Dockerized GA4GH Beacon
docker beacon
HTML
•
MIT License
•0•3•0•0•Updated Nov 12, 2020Nov 12, 2020
dgvar
Public
Screening deleterious germline variants (DGVs) in WCM UC cohort
germline-variants
Python
•1•5•0•0•Updated Aug 10, 2020Aug 10, 2020
unity-workshop
Public
R Lab XR in Healthcare Unity Workshop
workshop unity vr oculus virtual-reality healthcare spatial-computing oculus-quest ai-xr-lab
C#
•
MIT License
•0•2•0•0•Updated Aug 7, 2020Aug 7, 2020
paper_trail
Public
Track changes to your models' data. Good for auditing or versioning.
Ruby
•
MIT License
•898•0•0•0•Updated Aug 18, 2015Aug 18, 2015
sunspot_autocomplete
Public
JavaScript
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Other
•15•0•0•0•Updated Mar 1, 2012Mar 1, 2012