Yu-Group

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31 repositories

imodels-experiments
Public
Experiments with experimental rule-based models to go along with imodels.
python rules data-science ai jupyter tabular-data python3 decision-trees trees interpretability
HTML
•4•15•5•1•Updated Nov 24, 2024Nov 24, 2024
epistasis-cardiac-hypertrophy
Public
Code for manuscript "Epistasis regulates genetic control of cardiac hypertrophy"
HTML
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MIT License
•0•1•0•0•Updated Nov 12, 2024Nov 12, 2024
MS-analysis-NMF
Public
Simulation study exploring the utility of non-negative matrix factorization (NMF) for deconvolving complex mass spectra
0•0•0•0•Updated Aug 5, 2024Aug 5, 2024
sMPS2
Public
Code for manuscript "A simplified MyProstateScore2.0 for high-grade prostate cancer"
Python
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MIT License
•0•1•0•0•Updated Jun 3, 2024Jun 3, 2024
simChef
Public
An R package to facilitate PCS simulation studies.
R
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GNU General Public License v3.0
•0•20•24•2•Updated Mar 20, 2024Mar 20, 2024
vds-book-supplementary
Public
Jupyter Notebook
•14•40•1•0•Updated Feb 29, 2024Feb 29, 2024
veridical-flow
Public
Making it easier to build stable, trustworthy data-science pipelines based on the PCS framework.
workflow tutorial statistics ai ml pandas python3 preprocessing stability ensembling
Jupyter Notebook
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MIT License
•6•69•4•3•Updated Feb 12, 2024Feb 12, 2024
yugroup-website
Public
Website for yu group
HTML
•0•1•0•0•Updated Feb 8, 2024Feb 8, 2024
iterative-Random-Forest
Public
Python implementation of iterative-random-forests
data-science interactions iterative-random-forests python machine-learning scikit-learn
Cython
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Other
•19•61•10•0•Updated Dec 20, 2023Dec 20, 2023
covid19-severity-prediction
Public
Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈
visualization data-science statistics python3 forecasting data-analysis risk-assessment risk-modelling outbreak county-health-data
Jupyter Notebook
•
MIT License
•92•228•3•0•Updated Nov 13, 2023Nov 13, 2023
stat-215a-fall-2023
Public
CSS
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Other
•0•0•0•0•Updated Oct 5, 2023Oct 5, 2023
clinical-rule-vetting
Public
Learning clinical-decision rules with interpretable models.
data-science machine-learning ai scikit-learn python3 medical stability interpretability rule-based xai
Jupyter Notebook
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MIT License
•11•20•0•4•Updated Aug 10, 2023Aug 10, 2023
vthemes
Public
An R package with modern themes for ggplot2 and R Markdown documents
HTML
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GNU General Public License v3.0
•0•2•0•0•Updated Jul 17, 2023Jul 17, 2023
vdocs
Public
An R package for beautiful and easy documentation of PCS-style analyses
HTML
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GNU General Public License v3.0
•1•4•8•0•Updated Jun 6, 2023Jun 6, 2023
molecular-partner-prediction
Public
Predicting successful CME events using only clathrin markers. 🦠📈
tracking data-science machine-learning bioinformatics statistics computational-biology prediction python3 classification segmentation
Jupyter Notebook
•1•3•0•0•Updated Feb 6, 2023Feb 6, 2023
stat-215a-fall-2022
Public
CSS
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Other
•0•0•0•0•Updated Aug 29, 2022Aug 29, 2022
autogluon
Public
AutoGluon: AutoML for Image, Text, and Tabular Data
Python
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Apache License 2.0
•929•1•0•0•Updated Jun 15, 2022Jun 15, 2022
dgpoix
Public
Generate synthetic data that is as fresh as the real thing
data-science data r synthetic-data simulation
R
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Other
•0•3•6•0•Updated May 18, 2022May 18, 2022
mjo
Public
Interpretable forecasting of the Madden-Julian Oscillation
Jupyter Notebook
•0•2•0•0•Updated May 4, 2022May 4, 2022
r-dev
Public
Materials for Yu Group software series R presentation on 04/27/2022.
HTML
•0•0•0•0•Updated Apr 27, 2022Apr 27, 2022
adaptive-wavelets
Public
Adaptive, interpretable wavelets across domains (NeurIPS 2021)
statistics interpretability wavelets wavelet-analysis distillation xai explainability machine-learning deep-learning neural-network
Jupyter Notebook
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MIT License
•10•71•2•0•Updated Jan 30, 2022Jan 30, 2022
stat-215a-fall-2021
Public
CSS
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Other
•0•1•0•0•Updated Nov 1, 2021Nov 1, 2021
neuroimaging-analysis
Public
Analysis of neuroimaging tissue from the Berkeley Advanced Imaging Center.
Jupyter Notebook
•0•2•0•0•Updated Sep 28, 2021Sep 28, 2021
covid19-dashboard
Public
Dashboard for comparing different counties.
HTML
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MIT License
•0•0•0•0•Updated May 14, 2021May 14, 2021
transfer-learning
Public
Understanding transfer learning.
Jupyter Notebook
•0•2•0•0•Updated Apr 2, 2021Apr 2, 2021
interaction_selection
Public
code for interaction selection
Jupyter Notebook
•1•1•0•0•Updated Jan 20, 2021Jan 20, 2021
stat-215a-fall-2020
Public
STAT 215A course website for Fall 2020.
CSS
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Other
•0•1•0•0•Updated Nov 17, 2020Nov 17, 2020
staDRIP
Public
Code and PCS documentation for staDRIP paper
HTML
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MIT License
•0•3•0•0•Updated Nov 6, 2020Nov 6, 2020
covid19-matching
Public
Python
•1•1•0•0•Updated Oct 19, 2020Oct 19, 2020
staNMF
Public
stability driven NMF
Python
•2•4•2•0•Updated Sep 24, 2020Sep 24, 2020