Skip to content

@SGBC SLU Global Bioinformatics Centre

Change the repository type filter

All

    Repositories list

    23 repositories

    • survey

      Public
      This is the curated version of the Open Data survey and Pigweb analysis. You can use this Rmarkdown template to
      HTML
      •
      GNU General Public License v3.0
      •13•1•5•1•Updated Oct 27, 2024Oct 27, 2024

    • weatherdata

      Public
      This project will integrate data from SLU Lantmet and SMHI for data analysis
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Mar 23, 2023Mar 23, 2023

    • capture

      Public
      the capture-seq assembler
      Python
      •
      MIT License
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • ENAbler

      Public
      programmatic ena submission (work in progress)
      Python
      •
      MIT License
      •0•0•0•6•Updated Dec 8, 2022Dec 8, 2022

    • kirk

      Public
      captain of the enterprise
      Python
      •
      MIT License
      •0•0•0•3•Updated Dec 8, 2022Dec 8, 2022

    • surveys-example

      Public
      Surveys host the R markdown code necessary to analyse surveys and compare results with the State of Open Data survey. The markdown book contain a large number of code snippets useful to process and visualise survey data from Netigate surveys and the State of Open Data survey results which use somewhat different data formats.
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2022May 9, 2022

    • breedmaps

      Public
      Later
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jan 11, 2022Jan 11, 2022

    • course

      Public
      Resources for our bioinformatics course
      Python
      •
      Creative Commons Attribution 4.0 International
      •3•4•6•5•Updated Jul 19, 2021Jul 19, 2021

    • DFdashboard

      Public
      A Dashboard providing farmers with a Dashboard accessing data from Gigacow
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • anigalaxy

      Public
      Developing a local Galaxy implementation for Animal science and genetics
      Shell
      •0•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • galaksio

      Public
      An easy-to-use way for running Galaxy workflows.
      scienceworkflowbioinformaticsreproducible-researchngseasy-to-useuser-friendlyworkflowsbioinformatics-analysisdocker
      JavaScript
      •
      GNU General Public License v3.0
      •6•20•26•0•Updated Nov 19, 2019Nov 19, 2019

    • Galaksio-py3

      Public
      A Python 3 version of Galaksio
      0•0•0•0•Updated Nov 15, 2019Nov 15, 2019

    • metagenome-binning

      Public
      Python
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Aug 26, 2019Aug 26, 2019

    • kronos

      Public
      the group's intranet
      Vue
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 31, 2018Oct 31, 2018

    • sgbc.slu.se

      Public
      the group website
      HTML
      •2•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • sge_scripts

      Public
      Repository to aggregate useful qsub scripts for our users
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 14, 2018May 14, 2018

    • app-galaksio

      Public
      1•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • useGalaksio

      Public
      Creating a website for generation of Galaksio demo websites.
      0•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • cluster_doc

      Public
      User documentation for our cluster
      websitedocumentationcluster
      0•1•0•0•Updated Nov 29, 2017Nov 29, 2017

    • BarcodeBonanza

      Public
      NextFlow workflows for managing 16S rRNA data using DADA2
      MIT License
      •0•0•0•0•Updated Nov 22, 2017Nov 22, 2017

    • metlab_tools

      Public
      automated build of various bioinformatics software
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 10, 2017Sep 10, 2017

    • tutorials

      Public
      📔 Various bioinformatics tutorials
      Other
      •38•0•0•0•Updated Mar 28, 2017Mar 28, 2017

    • metlab

      Public
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Feb 28, 2017Feb 28, 2017