4 Pull requests merged by 2 people

• Implement automatic sharding for nf-test

  #1810 merged Feb 26, 2025

• ci: Skip nf-test on docs changes

  #1761 merged Feb 25, 2025

• Clean up nf-test tests and snapshot

  #1809 merged Feb 25, 2025

• convert pytests to nf-test for concatenation

  #1806 merged Feb 25, 2025

1 Pull request opened by 1 person

• [WIP] Integrate parabricks

  #1804 opened Feb 19, 2025

2 Issues opened by 2 people

• Deal with trailing whitespace when snapshotting empty lists in nf-test

  #1807 opened Feb 25, 2025

• Termination of the sarek process without any output

  #1805 opened Feb 19, 2025

6 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• feat: add MuSE as new somatic variant caller

  #1744 commented on Feb 25, 2025 • 3 new comments

• LOFTEE plugin not generating annotations in VEP output (Sarek v3.4.4)

  #1795 commented on Feb 21, 2025 • 0 new comments

• NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP terminated with an error

  #1801 commented on Feb 25, 2025 • 0 new comments

• error in test by haplotypecaller

  #1396 commented on Feb 25, 2025 • 0 new comments

• Output files for CNVkit incorrect

  #1251 commented on Feb 26, 2025 • 0 new comments

• Finally merge in Sarek bcftools normalization (#1682)

  #1770 commented on Feb 26, 2025 • 0 new comments