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Allele frequencies for indels and edits

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#217 In nf-core/crisprseq;

· dtatarak opened on Nov 15, 2024

Mageck MLE Failes with non trival design matrix.

bugSomething isn't workingSomething isn't working

Status: Open.

#211 In nf-core/crisprseq;

· andrewholding opened on Oct 16, 2024

Wrong link in documentation for current dev branch under Usage -> Screening -> Running gene essentiality scoring for example contrast file.

bugSomething isn't workingSomething isn't working

Status: Open.

#205 In nf-core/crisprseq;

· LeonHornich opened on Oct 5, 2024

Screening documentation: link to example count table is not working properly

bugSomething isn't workingSomething isn't working

Status: Open.

#201 In nf-core/crisprseq;

· LeonHornich opened on Sep 20, 2024

Pass DRUGZ in conda

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/crisprseq;

· LaurenceKuhl opened on Aug 1, 2024

Sample not being detected as edited despite evidence of editing in the bam file

bugSomething isn't workingSomething isn't working

Status: Open.

#188 In nf-core/crisprseq;

· alan-tracey opened on Jul 25, 2024

Pipeline breaking when I tried to run with -r 2.1.1 instead of -r dev

bugSomething isn't workingSomething isn't working

Status: Open.

#183 In nf-core/crisprseq;

· AASTHAPAL9 opened on Jul 24, 2024

MAGECK mle cnv correction doesn't work

bugSomething isn't workingSomething isn't working

Status: Open.

#179 In nf-core/crisprseq;

· LaurenceKuhl opened on Jul 22, 2024

MAGeCK is pulling conditions instead of unique sample names

bugSomething isn't workingSomething isn't working

Status: Open.

#172 In nf-core/crisprseq;

· jeremymsimon opened on Jul 15, 2024

Suggested addition: a PCA illustrating sample/condition/replicates

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#166 In nf-core/crisprseq;

· jeremymsimon opened on Jul 5, 2024

ZeroDivisionError at alignment_summary.py stage due to low read number in input: mapped_reads_percentage = mapped_reads_count * 100 / total_reads_count

bugSomething isn't workingSomething isn't working

Status: Open.

#164 In nf-core/crisprseq;

· alan-tracey opened on Jul 4, 2024

N characters introduced into *indels.csv

bugSomething isn't workingSomething isn't working

Status: Open.

#162 In nf-core/crisprseq;

· alan-tracey opened on Jul 4, 2024