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Double check that for all protocols, sequences with different Cprimers (isotypes) are not collapsed when collapsing duplicates

bugSomething isn't workingSomething isn't working

Status: Open.

#356 In nf-core/airrflow;

· ggabernet opened on Oct 23, 2024

move contaminant sequence detection to before collapsing duplicates

enhancementNew feature or requestNew feature or request

Status: Open.

#355 In nf-core/airrflow;

· ggabernet opened on Oct 23, 2024

modify pRESTO collapseseq process to keep UMI annotations

enhancementNew feature or requestNew feature or request

Status: Open.

#354 In nf-core/airrflow;

· ggabernet opened on Oct 23, 2024

Enhancements for TCR analysis (locus TR)

enhancementNew feature or requestNew feature or request

Status: Open.

#353 In nf-core/airrflow;

· ggabernet opened on Oct 19, 2024

Add UMI barcode diversity reporting

enhancementNew feature or requestNew feature or request

Status: Open.

#352 In nf-core/airrflow;

· ggabernet opened on Oct 19, 2024

Filtering sequences belonging to the loci specified in the samplesheet only

enhancementNew feature or requestNew feature or request

Status: Open.

#351 In nf-core/airrflow;

· ggabernet opened on Oct 19, 2024

New bulk 5'-RACE supported protocol, rescue non-overlaping reads and IgBlast 19 columns format

enhancementNew feature or requestNew feature or request

Status: Open.

#342 In nf-core/airrflow;

· JustBioinfo opened on Aug 5, 2024

Incorrect number of sequences

bugSomething isn't workingSomething isn't working

Status: Open.

#340 In nf-core/airrflow;

· eba28 opened on Jun 24, 2024

Add the calculations of physicochemical properties from alakazam

enhancementNew feature or requestNew feature or request

Status: Open.

#326 In nf-core/airrflow;

· JustBioinfo opened on Apr 22, 2024

Fetch other databases than IMGT: AIRR reference set

enhancementNew feature or requestNew feature or request

Status: Open.

#300 In nf-core/airrflow;

· ggabernet opened on Jan 22, 2024

Add regions translations to final repertoire table

enhancementNew feature or requestNew feature or request

Status: Open.

#298 In nf-core/airrflow;

· ggabernet opened on Jan 18, 2024

Report findthreshold should report chosen threshold

enhancementNew feature or requestNew feature or request

Status: Open.

#272 In nf-core/airrflow;

· ggabernet opened on Jul 3, 2023

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3.2