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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 375 218

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 144 67

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 225 repositories
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Nov 24, 2024
  • tempo Public

    CCS research pipeline to process WES and WGS TN pairs

    mskcc/tempo’s past year of commit activity
    Groovy 12 5 47 (1 issue needs help) 8 Updated Nov 23, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Nov 23, 2024
  • smile-dashboard Public
    mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 8 0 0 Updated Nov 22, 2024
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 18 Updated Nov 21, 2024
  • loki Public

    Workflow for handling CNV events

    mskcc/loki’s past year of commit activity
    Nextflow 0 MIT 1 1 0 Updated Nov 20, 2024
  • swabnseq Public
    mskcc/swabnseq’s past year of commit activity
    Python 0 0 0 0 Updated Nov 20, 2024
  • ridgeback Public

    Toil API

    mskcc/ridgeback’s past year of commit activity
    Python 1 2 38 4 Updated Nov 20, 2024
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 31 Updated Nov 19, 2024
  • argos-cwl Public

    A portable and reproducible pipeline for targeted analysis

    mskcc/argos-cwl’s past year of commit activity
    Common Workflow Language 0 0 5 2 Updated Nov 19, 2024
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