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@mckennalab

The McKenna lab

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  1. FlashFry FlashFry Public

    FlashFry: The rapid CRISPR target site characterization tool

    Scala 66 10

  2. Circuitseq Circuitseq Public

    Nanopore Plasmid Sequencing

    JavaScript 30 1

  3. SingleCellLineage SingleCellLineage Public archive

    Updated scripts and pipelines for processing GESTALT data at single-cell resolution

    Scala 19 8

  4. TreeUtils TreeUtils Public

    A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees

    Scala 5 1

  5. SciMaul SciMaul Public archive

    SCIMaul: A read splitter for single-cell experiments

    Scala 4

  6. gene_146 gene_146 Public

    Code and course material for Gene/QBS 146: Foundations of Bioinformatics I

    Jupyter Notebook 3 2

Repositories

Showing 10 of 21 repositories
  • counterfeiter Public

    simulated lineage trees with cell patterning options

    mckennalab/counterfeiter’s past year of commit activity
    Rust 0 GPL-3.0 0 0 0 Updated Nov 26, 2024
  • clique Public

    Read alignment and collapsing for lineage data

    mckennalab/clique’s past year of commit activity
    Rust 1 GPL-3.0 0 0 0 Updated Oct 18, 2024
  • FlashFry Public

    FlashFry: The rapid CRISPR target site characterization tool

    mckennalab/FlashFry’s past year of commit activity
    Scala 66 10 9 (1 issue needs help) 0 Updated Jun 12, 2024
  • gene_146 Public

    Code and course material for Gene/QBS 146: Foundations of Bioinformatics I

    mckennalab/gene_146’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated May 7, 2024
  • butcher Public

    A opinionated read trimmer

    mckennalab/butcher’s past year of commit activity
    Rust 0 0 0 0 Updated Oct 13, 2023
  • Circuitseq Public

    Nanopore Plasmid Sequencing

    mckennalab/Circuitseq’s past year of commit activity
    JavaScript 30 1 6 0 Updated Oct 10, 2023
  • PhysiCell-Studio-2.26.122 Public
    mckennalab/PhysiCell-Studio-2.26.122’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 8, 2023
  • TreeUtils Public

    A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees

    mckennalab/TreeUtils’s past year of commit activity
    Scala 5 GPL-3.0 1 0 0 Updated May 8, 2023
  • NextLineage Public

    Lineage recorder processing using NextFlow

    mckennalab/NextLineage’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Jan 27, 2023
  • PennGrader Public Forked from LeoMurri/PennGrader

    A seamless in-line Jupyter Notebook autograder.

    mckennalab/PennGrader’s past year of commit activity
    Python 0 10 0 0 Updated Dec 30, 2022
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