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sbt Public
An implementation of the Search by Triplet track reconstruction algorithm on the Graphcore IPU.
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NNPOps Public
Forked from openmm/NNPOpsHigh-performance operations for neural network potentials
C++ Other UpdatedJul 10, 2024 -
torchani Public
Forked from aiqm/torchaniAccurate Neural Network Potential on PyTorch
Python MIT License UpdatedJul 8, 2024 -
prezto Public
Forked from sorin-ionescu/preztoThe configuration framework for Zsh
Shell MIT License UpdatedJun 19, 2024 -
openmm Public
Forked from openmm/openmmOpenMM is a toolkit for molecular simulation using high performance GPU code.
C++ UpdatedNov 14, 2023 -
sander-mlmm Public
A simple interface to allow electostatic embedding of machine learning potentials in sander.
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website Public
A repo for my personal website.
HTML GNU General Public License v3.0 UpdatedJul 25, 2023 -
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ipu Public
Example code for the IPU crash course
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trackr Public
Track reconstruction on the Graphcore IPU.
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siremol.org Public
Forked from chryswoods/siremol.orgCode for my websites
HTML UpdatedMar 31, 2022 -
vmmc Public
A C++ library to implement the "virtual-move" Monte Carlo algorithm for approximating the dynamical evolution of systems of strongly interacting overdamped particles.
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aabbcc Public
Dynamic AABB trees in C++ with support for periodic systems.
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thin_filament_data Public
Forked from milliams/thin_filament_dataScripts for preparing thin filament CryoEM data
Python UpdatedAug 3, 2020 -
CAPMD Public
Forked from nrstillman/CAPMDCellular Active Particle Model - (DOME)
C++ UpdatedJun 12, 2020 -
unet Public
Forked from milliams/unetU-Net for PROOF project
Python MIT License UpdatedJun 4, 2020 -
cxx-template Public
Manage simple C++ projects with ease.
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proof Public
Forked from milliams/proofSoftware for the identification of accessory proteins on filaments
Python MIT License UpdatedFeb 17, 2020 -
rdkit Public
Forked from rdkit/rdkitThe official sources for the RDKit library
C++ Other UpdatedAug 5, 2019 -
biosimspace_workshop Public
Forked from CCPBioSim/biosimspace-workshopWorkshop to introduce and teach the BioSimSpace package
HTML MIT License UpdatedMay 15, 2019 -
slsm Public
A C++ implementation of a stochastic level-set method.
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taskfarmer Public
A simple task farmer for running serial tasks with mpirun, written in C.
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python_and_data Public
Forked from CCPBioSim/python-and-data-workshopWorkshop that goes beyond beginner's python to give Jupyter use, intermediate python and data handling with pandas and matplotlib
HTML MIT License UpdatedApr 6, 2018 -
mdtraj Public
Forked from mdtraj/mdtrajA modern, open library for the analysis of molecular dynamics trajectories
C GNU Lesser General Public License v2.1 UpdatedMar 5, 2018 -
OpenLSTO Public
Forked from M2DOLab/OpenLSTO-liteOpen Source Level Set Topology Optimization Software
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latuxit Public
A command-line clone of the excellent macOS program LaTeXiT.
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assets Public
A repository to store assets (images, animations, etc.) for my GitHub projects.
TeX UpdatedJun 19, 2017 -
scikit-fmm Public
Forked from scikit-fmm/scikit-fmmscikit-fmm is a Python extension module which implements the fast marching method.
Python Other UpdatedJan 8, 2017 -
ising Public
A collection of 2d Ising model codes in various programming languages.
Awk GNU General Public License v3.0 UpdatedOct 20, 2016