Skip to content
@lbcb-sci

Šikić lab

A computational group with a focus on the development of new algorithms and AI models for the analysis of DNA and RNA sequencing data and biomolecular strucures

Popular repositories Loading

  1. raven raven Public

    De novo genome assembler for long uncorrected reads

    C++ 207 21

  2. racon racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    C++ 203 34

  3. herro herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    Rust 198 11

  4. RiNALMo RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    Python 73 10

  5. graphmap2 graphmap2 Public

    Forked from isovic/graphmap

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

    C++ 67 6

  6. ra ra Public

    Forked from rvaser/ra

    Assembler for raw de novo genome assembly of long uncorrected reads.

    Python 37 4

Repositories

Showing 10 of 23 repositories
  • GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    lbcb-sci/GNNome’s past year of commit activity
    Python 30 BSD-3-Clause 3 1 0 Updated Nov 28, 2024
  • rockfish Public
    lbcb-sci/rockfish’s past year of commit activity
    Python 9 MIT 3 4 0 Updated Nov 18, 2024
  • RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    lbcb-sci/RiNALMo’s past year of commit activity
    Python 73 Apache-2.0 10 1 0 Updated Nov 11, 2024
  • herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    lbcb-sci/herro’s past year of commit activity
    Rust 198 11 32 6 Updated Nov 8, 2024
  • I002C Public

    Telomere-to-Telomere diploid Indian Genome

    lbcb-sci/I002C’s past year of commit activity
    7 0 0 0 Updated May 9, 2024
  • racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    lbcb-sci/racon’s past year of commit activity
    C++ 203 MIT 34 22 4 Updated Dec 29, 2023
  • raven Public

    De novo genome assembler for long uncorrected reads

    lbcb-sci/raven’s past year of commit activity
    C++ 207 MIT 21 27 2 Updated Nov 15, 2023
  • roko Public

    A deep learning consensus polisher

    lbcb-sci/roko’s past year of commit activity
    Python 7 GPL-3.0 2 0 3 Updated Oct 3, 2023
  • heron-raven Public Forked from tihomirkonosic/heron-raven

    Development of Raven - Heron branch

    lbcb-sci/heron-raven’s past year of commit activity
    C++ 0 MIT 22 0 0 Updated Jun 12, 2023
  • T2T-assemblies Public

    T2T assemblies of human and durian genomes

    lbcb-sci/T2T-assemblies’s past year of commit activity
    0 1 0 0 Updated May 4, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…