Skip to content

Issues: grunwaldlab/metacoder

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

144 Open 212 Closed
144 Open 212 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Exclude labels of lowest taxon_rank
#367 opened Oct 15, 2024 by fionnualabulman
1
Coloring of branches based on different groups (taxa detection by 12S, 16S gene regions)
#366 opened Sep 26, 2024 by Meng-OY
Running into error when plotting alpha diversity indexes
#365 opened Aug 22, 2024 by ChathuZ
2
Using ANCOM-BC2 for DA analysis
#364 opened Jul 29, 2024 by scilexenko
Error in layout$fun(graph = list(1598, TRUE, c(0, 0, 0, 0, 0, 0, 0, 0, : At rinterface_extra.c:82 : The value 10.642051692927977 is not representable as an integer. Invalid value
#362 opened Feb 6, 2024 by dhadsell
7
Phyloseq heat tree doesn't see taxon_id or supertaxon_id when trying filter_taxa?
#359 opened Nov 4, 2023 by hank00000
9
how to get access to the Taxmap dataframe ?
#358 opened Oct 27, 2023 by mariabernard
1
Relative abundance in heat tree
#357 opened Oct 25, 2023 by SimonMorvan
4
Getting incorrectly formated results with zero_low_counts
#356 opened Oct 24, 2023 by dhadsell
4
calc_diff_abund_deseq2, linear variables and "design"?
#351 opened Aug 9, 2023 by msolbach
3
Creation of different heat trees by treatments definded in sample data file
#350 opened Jul 19, 2023 by kazpa-kay
ggtext compatibility
#347 opened Mar 27, 2023 by Gian77
2
italicize node labels?
#345 opened Jan 25, 2023 by taylorreiter
2
Filter_taxa issue (No "taxon_id" column in the data set "3", so there are no taxon IDs)
#342 opened Aug 2, 2022 by SimonMorvan
1
Color nodes according to correlation between relative abundance and external variables
#340 opened Jun 29, 2022 by jpcasasruiz
5
Error in repel_boxes(data_points = as.matrix(text_data[movable, c("x", : std::bad_alloc
#338 opened May 18, 2022 by zachary-foster
Figure readability for publication?
#336 opened Apr 1, 2022 by hbbshulman
1
metacoder with MetagenomeSeq
#335 opened Mar 21, 2022 by acpaulo
5
Error with parse_tax_data and installation issues
#334 opened Mar 1, 2022 by zachary-foster
12
Failure when installing metacoder in RStudio in both windows and Ubuntu 20.04
#333 opened Feb 25, 2022 by emankhalaf
2
Confusion about filter_taxa and filter_obs
#332 opened Feb 10, 2022 by levlitichev
3
Update example data format
#331 opened Feb 2, 2022 by zachary-foster
Export p-values with heircachy amd taxanomic names?
#330 opened Jan 20, 2022 by catherineel
2
Alpha-diversity assessed by richness (Chao1, ACE)
#329 opened Dec 29, 2021 by biosciences
2
How to filter non-significant odd named taxa, and only keep the significant odd named taxa?
#324 opened Oct 25, 2021 by catherineel
8
ProTip! Mix and match filters to narrow down what you’re looking for.