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no bigwig file; cannot stat

Status: Open.

#86 In fl-yu/CUT-RUNTools-2.0;

· thugib opened on Apr 10, 2025

Single end fastq file as input?

Status: Open.

#83 In fl-yu/CUT-RUNTools-2.0;

· pc2001 opened on Sep 6, 2024

about Configuration file (bulk-config.json)

Status: Open.

#82 In fl-yu/CUT-RUNTools-2.0;

· ajcorriaosorio opened on May 9, 2024

Issues in SEACR_1.1.sh file

Status: Open.

#81 In fl-yu/CUT-RUNTools-2.0;

· saimaniharreddy opened on Mar 5, 2024

Installation of R packages

Status: Open.

#80 In fl-yu/CUT-RUNTools-2.0;

· cnyongjun opened on Feb 16, 2024

Picard file error

Status: Open.

#79 In fl-yu/CUT-RUNTools-2.0;

· Shivani-kushwaha opened on Jan 7, 2024

meme problen：Failed to create PNG file；make_cut_matrix mistake

Status: Open.

#78 In fl-yu/CUT-RUNTools-2.0;

· Zhiyi-Chen17 opened on Nov 13, 2023

SEACR input and spike-in normalization

Status: Open.

#77 In fl-yu/CUT-RUNTools-2.0;

· jordan841220 opened on Sep 8, 2023

header of the produced file in bam is wrong

Status: Open.

#75 In fl-yu/CUT-RUNTools-2.0;

· sunta3iouxos opened on Aug 2, 2023

space in the path brakes the script

Status: Open.

#74 In fl-yu/CUT-RUNTools-2.0;

· sunta3iouxos opened on Jul 10, 2023

gff2bed: line 132: convert2bed: command not found

Status: Open.

#73 In fl-yu/CUT-RUNTools-2.0;

· sunta3iouxos opened on Jul 5, 2023

ghostscript is not found

Status: Open.

#72 In fl-yu/CUT-RUNTools-2.0;

· sunta3iouxos opened on Jul 5, 2023