dfsp-spirit
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fsbrain Public
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
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NeuroFormats.jl Public
Handling of structural neuroimaging file formats for Julia.
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dfsp-spirit.github.io Public
Repo for my personal website, generated with Jekyll. Ignore.
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freesurferformats Public
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
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syncopy Public
Forked from esi-neuroscience/syncopySystems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 10, 2024 -
playground Public
My playground for trying out software, often computational neuroscience packages. Ignore this, you don't want it.
Python UpdatedJun 27, 2024 -
libfs Public
A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.
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cpp_geodesics Public
Fast computation of geodesic distances and related mesh descriptors on (brain surface) meshes in C++ and OpenMP.
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freesurfer_parallel_scripts Public
Shell scripts to run FreeSurfer's recon-all in parallel on multi-core machines. Developed during my time in Christine Ecker's Lab at KGU.
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photowebpage Public
A simple Python script to generate a static HTML gallery page that displays all images in a directory. Intended for my personal use only. Ignore this.
Python MIT License UpdatedApr 29, 2024 -
neuroformats-rs Public
Handling of structural neuroimaging file formats for Rust.
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brainview Public archive
Python module to visualize morphometry data on 3D brain meshes. Based on matplotlib and mayavi. Prototype.
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neuro Public
Go module for reading and writing structural neuroimaging file formats. Supports FreeSurfer MGH, MGZ, and related formats.
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wal Public
Quake modding toolkit for R. Can read, export and import Quake bitmap images in WAL and Q1 texture formats, read and export MDL and MD2 models, extract PAK and WAD archives.
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pkgfilecache Public
GNU R package that allows package authors to cache data files in user directories.
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ptgl-openapi Public
OpenAPI specification for the API of the Protein Topology Graph Library (PTLG).
Creative Commons Zero v1.0 Universal UpdatedJan 30, 2024 -
fuji Public
Forked from pangaea-data-publisher/fujiFAIRsFAIR Research Data Object Assessment Service
Python MIT License UpdatedJan 8, 2024 -
dfsp-spirit Public
May Github profile header, displayed when visiting my profile page.
UpdatedJan 2, 2024 -
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jena-site Public
Forked from apache/jena-siteWebsite sources for the Apache Jena website
HTML Apache License 2.0 UpdatedOct 19, 2023 -
jneuroformats Public
Reading and writing structural neuroimaging file formats for Java.
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esi-syncopy-feedstock Public
Forked from conda-forge/esi-syncopy-feedstockA conda-smithy repository for esi-syncopy.
BSD 3-Clause "New" or "Revised" License UpdatedSep 25, 2023 -
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Data from our own pre-processing of the ABIDE I sMRI dataset (1035 subjects) in FreeSurfer v6.
6 UpdatedJun 29, 2023 -
Slides for my presentation: 'Introduction to Git for Scientists'
Other UpdatedMar 20, 2023 -
pyhaze Public
Fast smoothing of per-vertex data on triangular meshes for Python.
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haze Public
Fast smoothing of per-vertex data on triangular meshes for R.
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mass-offlineimap Public
Script to move a number of IMAP mail accounts from an old to a new server over IMAP using offlineimap
Shell GNU General Public License v2.0 UpdatedFeb 12, 2023 -
system_config Public
My system configuration (bash_profile, bashrc, vimrc, ...) including my setup for popular neuroimaging software.
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aspell Public
Forked from GNUAspell/aspellReScript GNU Lesser General Public License v2.1 UpdatedFeb 3, 2023