LC-MS/MS derived peptide retention time deviation calculator across replicates for DDA and DIA derived result files.
usage: UniformRT.py [-h] -ex [-ex ...] -ip [-ip ...] -rt [-rt ...]
Variation from run-to-run retention time (RT) deviation in LC-MS derived DDA
or DIA results
positional arguments:
-ex Mention the type of acquisition method used (DDA/DIA)
-ip This tool can take Peptide Spectrum Match (PSM) table from
Proteome Discoverer or DIA-Spectral Library search output from
Skyline in tab delimitted format (txt/tsv)
-rt Minimum number of RTs to be considered for the analysis
optional arguments:
-h, --help show this help message and exit