bluenote-1577
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fairy Public
alignment-free coverage calculation for metagenomic binning >100 times faster
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sylph Public
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 13, 2024 -
dbghaplo Public
Long-read haplotyping of small sequences with SNP-encoded de Bruijn graphs
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skani Public
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
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floria Public
Strain-level haplotyping for metagenomes with short or long-reads.
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phase-doc Public template
Forked from readthedocs/tutorial-templateTemplate for the Read the Docs tutorial
Python UpdatedJul 5, 2024 -
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flopp Public
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
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partitions Public
Forked from DDOtten/partitionsA disjoint-sets/union-find implementation that allows for efficient iteration over the elements of a set.
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skani-mummer-train Public
Repository for training skani on mummer data to improve accuracy.
Python UpdatedFeb 7, 2023 -
highs-sys Public
Forked from rust-or/highs-sysRust binding for the HiGHS linear programming solver
Rust UpdatedJan 18, 2023 -
sce-aligner Public
A basic seed-chain-extend aligner with linear-gap cost chaining and quadratic time extension for experiments
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os-minimap2 Public
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
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bay Public
Forked from eliottvincent/bay🐟 A simple theme for Jekyll. Live at https://eliottvincent.github.io/bay/
HTML ISC License UpdatedSep 27, 2022 -
markdown_readme Public
Forked from fefong/markdown_readmeMarkdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
1 UpdatedJun 21, 2022 -
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Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
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nthash Public
Forked from luizirber/nthashntHash implementation in Rust
Rust Other UpdatedFeb 4, 2022