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BUG in construct_graph

Status: Open.

#418 In a-r-j/graphein;

· kamurani opened on Feb 18, 2025

Keep all hetatms for all-atom graphs

Status: Open.

#415 In a-r-j/graphein;

· EvanKomp opened on Nov 4, 2024

Bug in calculating edges based on k nearest neighbors

Status: Open.

#410 In a-r-j/graphein;

· tsjain opened on Aug 23, 2024

ERROR 'NoneType' object has no attribute 'nodes'. WARNING can't convert np.ndarray of type numpy.str_.

Status: Open.

#409 In a-r-j/graphein;

· PabloExperimental opened on Aug 17, 2024

Error in tdc_developability.ipynb notebook

Status: Open.

#400 In a-r-j/graphein;

· velocirraptor23 opened on Jun 17, 2024

convert_nx_to_pyg doubles edge_index but not kind

Status: Open.

#392 In a-r-j/graphein;

· l-Dr-MR-l opened on Apr 24, 2024

Error occurred while constructing edges from pdb files

Status: Open.

#387 In a-r-j/graphein;

· Runinthenight opened on Apr 19, 2024

Error occurred while Constructing edges when reading PDB file.

Status: Open.

#384 In a-r-j/graphein;

· 1412140736 opened on Apr 9, 2024

pip install fails on fresh python==3.11 and python==3.10 conda environment

Status: Open.

#381 In a-r-j/graphein;

· kamurani opened on Apr 5, 2024

error in the tutorial

Status: Open.

#368 In a-r-j/graphein;

· xiaopuren opened on Feb 14, 2024

ProteinGraphDataset fails if a single graph construction fails.

Status: Open.

#345 In a-r-j/graphein;

· kamurani opened on Sep 20, 2023

[Docs] API Reference for graphein.ml is broken

Status: Open.

#344 In a-r-j/graphein;

· kamurani opened on Sep 19, 2023