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1. genome-seek genome-seek Public

   Clinical Whole Genome and Exome Sequencing Pipeline

   Python 20 10

2. RNA-seek RNA-seek Public

   Forked from skchronicles/RNA-seek

   A comprehensive quality-control and quantification RNA-seq pipeline

   Python 4 2

3. modr modr Public

   An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

   Python 5 1

4. metavirs metavirs Public

   Viral Metagenomics Assembly and Annotation Pipeline

   Python 5 1

5. cell-seek cell-seek Public

   One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

   Python 1 1

6. chrom-seek chrom-seek Public

   An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

   Python 5 2