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NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
Nextflow 8 1
Target exome sequencing analysis for NYU NGS580 gene panel
Nextflow 10 5
Nextflow pipeline for Illumina NGS demultiplexing
Nextflow 3 1
DNA methylation for tumor subclassifications by methylation array.
R 3 1
Clinical reporting application for Oncomine Myeloid assay results.
HTML 1
Oncomine solid tumor reporting application
HTML
Laboratory Information Management System (LIMS)
repo for automation python/R scripts
oncomine automation
Web app for clinical interpretation of Ion Reporter variant results
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