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update gatb-core to get the options -histo and -histo2D that output t…
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…he kmer count profile and histo2D count matrix into text files
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@clemaitre
clemaitre committed Jun 11, 2018
1 parent 0e52c06 commit 3ff0cc7
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion thirdparty/gatb-core
Submodule gatb-core updated 14 files
+6 −3 gatb-core/cmake/CppUnit.cmake
+24 −0 gatb-core/src/gatb/bank/api/Sequence.hpp
+37 −8 gatb-core/src/gatb/bcalm2/ograph.cpp
+1 −1 gatb-core/src/gatb/debruijn/impl/Graph.cpp
+3 −3 gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
+13 −10 gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
+1 −1 gatb-core/src/gatb/debruijn/impl/Simplifications.hpp
+26 −7 gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp
+57 −25 gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
+2 −0 gatb-core/src/gatb/tools/misc/api/StringsRepository.hpp
+1 −1 gatb-core/test/benchmark/CMakeLists.txt
+99 −0 gatb-core/test/benchmark/bench_bagfile.cpp
+1 −1 gatb-core/test/benchmark/bench_minim.cpp
+91 −0 gatb-core/test/unit/src/bank/TestSequence.cpp

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