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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 907 240

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 265 45

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 34

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 160 repositories
  • terra-resource-janitor Public

    Janitor service to cleanup resources created by Cloud Resource Library (CRL)

    DataBiosphere/terra-resource-janitor’s past year of commit activity
    Java 2 BSD-3-Clause 0 0 11 Updated Feb 17, 2025
  • terra-workspace-data-service Public
    DataBiosphere/terra-workspace-data-service’s past year of commit activity
    Java 4 BSD-3-Clause 0 0 3 Updated Feb 17, 2025
  • terra-workspace-manager Public
    DataBiosphere/terra-workspace-manager’s past year of commit activity
    Java 14 BSD-3-Clause 7 0 5 Updated Feb 17, 2025
  • terra-landing-zone-service Public
    DataBiosphere/terra-landing-zone-service’s past year of commit activity
    Java 6 BSD-3-Clause 1 0 3 Updated Feb 17, 2025
  • terra-external-credentials-manager Public
    DataBiosphere/terra-external-credentials-manager’s past year of commit activity
    Java 4 BSD-3-Clause 0 0 3 Updated Feb 17, 2025
  • terra-resource-buffer Public

    Terra Resource Buffering Service

    DataBiosphere/terra-resource-buffer’s past year of commit activity
    Java 4 BSD-3-Clause 2 0 1 Updated Feb 17, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 9 BSD-3-Clause 4 0 6 Updated Feb 17, 2025
  • terra-billing-profile-manager Public
    DataBiosphere/terra-billing-profile-manager’s past year of commit activity
    Java 5 BSD-3-Clause 1 0 4 Updated Feb 17, 2025
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 2 Updated Feb 17, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 3 Updated Feb 17, 2025
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