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add mm39 reference genome

RENEERepoNameRepoName

Status: Open.

#189 In CCBR/RENEE;

· kelly-sovacool opened on Feb 21, 2025

Create a test workflow cronjob

RENEERepoNameRepoName

Status: Open.

#183 In CCBR/RENEE;

· kopardev opened on Dec 2, 2024

ResourceWarning in v2.6

bugSomething isn't workingSomething isn't working

low priority

RENEERepoNameRepoName

Status: Open.

#160 In CCBR/RENEE;

· kelly-sovacool opened on Sep 24, 2024

 ·  

2025-01

improve slurm complete/error email to describe where the pipeline output is

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

Status: Open.

#148 In CCBR/RENEE;

· kelly-sovacool opened on Aug 5, 2024

feature: DTU - differential transcript usage

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

Status: Open.

#144 In CCBR/RENEE;

· kelly-sovacool opened on Aug 5, 2024

write output fastq validator to a log file instead of an output file

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

Status: Open.

#140 In CCBR/RENEE;

· kelly-sovacool opened on Aug 2, 2024

RNA Report is failing with too few samples.

bugSomething isn't workingSomething isn't working

low priority

RENEERepoNameRepoName

Status: Open.

#117 In CCBR/RENEE;

· slsevilla opened on Feb 16, 2024

STAR command is not using TMP dir - moving and removing files created in the outputdir

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

RENEERepoNameRepoName

wait_for_nxfwaiting to fix this issue until we convert to nextflowwaiting to fix this issue until we convert to nextflow

Status: Open.

#116 In CCBR/RENEE;

· slsevilla opened on Feb 16, 2024

Feature request: Add "annoFuse"

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

wait_for_nxfwaiting to fix this issue until we convert to nextflowwaiting to fix this issue until we convert to nextflow

Status: Open.

#112 In CCBR/RENEE;

· kopardev opened on Feb 8, 2024

Feature Request: Add "STAR-Fusion"

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

wait_for_nxfwaiting to fix this issue until we convert to nextflowwaiting to fix this issue until we convert to nextflow

Status: Open.

#111 In CCBR/RENEE;

· kopardev opened on Feb 8, 2024

Migrate all resources to S3 bucket

enhancementNew feature or requestNew feature or request

RENEERepoNameRepoName

Status: Open.

#89 In CCBR/RENEE;

· kelly-sovacool opened on Jan 11, 2024

Feature: add dupradar

RENEERepoNameRepoName

wait_for_nxfwaiting to fix this issue until we convert to nextflowwaiting to fix this issue until we convert to nextflow

Status: Open.

#32 In CCBR/RENEE;

· kopardev opened on Sep 8, 2023