MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

DrugHIVE: Structure-based drug design with a deep hierarchical generative model

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.

Spatial direct messaging detected by bivariate Moran

Infer and visualize cell-cell communication for single-cell RNA-seq data

MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structures starting from a molecular dynamic trajectory.

A reimplementation of the ISCHIA LR interaction algorithm in Julia

🧪 InhibiPro - a web-based application for predicting the pharmacological activity of new drugs

SpaCCI: Spatially Aware Cell-Cell Interaction Analysis

Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment

A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)