Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

A Fast Telegram Group Management Bot Written In Python Using python-telegram-bot.

A python package and a set of shell commands to handle GTF files

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

PSI-Sigma

Explore and download data from the recount3 project

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

Use Thor's Axe to cut exons into their evolutionary building blocks ⚡

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

This is a package that provide tools to extract different genome architecture features, build taxonomy lineage and test features against certain value in taxonomy rank in fully automated pipeline.

GTF/GFF per gene non-overlapping exon length calculator

A tool to find genes of user specific exon number

Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/

Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools

Testing of mutual exclussion between pairs of exons of NMD

Deep neural network for splice sites prediction

Package for the recount workshop for BioC2017

Alignment of biological sequences and primer designing

Exon lenghts in GENCODE 26