#

dssp

Here are 11 public repositories matching this topic...

PDB-REDO / dssp

Application to assign secondary structure to proteins

proteins pdb dssp

Updated Oct 16, 2024
C++

dillondaudert / proteindatasets

Creating and manipulating various protein sequence-structure datasets using Python, Julia, and other tools.

bioinformatics jupyter tensorflow julia structure jupyter-notebook pandas python3 dataset protein biopython fasta blast dssp secondary psiblast uniref50

Updated Sep 1, 2018
Jupyter Notebook

branchialspace / foldbender

protein graph representation

bioinformatics pdb kaggle networkx gene-ontology dssp protein-function-prediction cafa pytorch-geometric alphafold alphafold2

Updated Aug 31, 2024
Python

MurrellGroup / AssigningSecondaryStructure.jl

Simplified DSSP algorithm implemented in Julia

julia protein secondary-structure dssp

Updated Nov 7, 2024
Julia

bartongroup / ProteoFAV

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

python bioinformatics structural-biology pdb annotations pandas variants data-analysis features mmcif dssp sifts

Updated Mar 1, 2024
Python

MMunibas / dssp

dssp : software for secondary structure assignment, now extended for reading MD trajectory files

Updated Jan 9, 2017
C++

hkabbech / DSSP_implt

Programming project (Python) - Implementation of the DSSP method (Secondary Structure Assignment)

dssp python3-6 pdb-files

Updated Sep 20, 2018
Python

hkabbech / AA_inventory

Inventory of amino acids present on the surface of peripheral proteins of a same family

hmm internship structure python3 pymol amino-acids dssp rscript

Updated Jul 23, 2018
Python

souadyoujilabadi / SASA_project

Program aimed to calculate the Solvent-Accessible Surface Area of proteins.

pdb dssp solvent-accessible-surface-area

Updated Sep 15, 2022
Python

AndreaRubbi / dssp_parser

Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein

parser parsing proteomics dssp interactomics hemoglobin dssp-parser

Updated Dec 13, 2019
Python

TanguyLallemand / parse_dssp_output

(M2-Project) Construction a data set of protein structures gathering structures filtered

structural-bioinformatics dssp

Updated Feb 6, 2019
Shell

Improve this page

Add a description, image, and links to the dssp topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the dssp topic, visit your repo's landing page and select "manage topics."