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@survival-lumc

Survival Analysis Group LUMC

A Github site for projects from the Survival Analysis Group at Leiden University Medical Center (LUMC, the Netherlands).

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  1. ValidationCompRisks ValidationCompRisks Public

    Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)

    R 25 10

  2. FrailtyTutorial FrailtyTutorial Public

    R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1…

    HTML 8

  3. Landmarking2.0 Landmarking2.0 Public

    Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen

    6

  4. FG-TotalFailureProbability FG-TotalFailureProbability Public

    Code and results of Section 4 of the paper "Fine-Gray subdistribution hazard models to simultaneously estimate the absolute risk of different event types: cumulative total failure probability may e…

    R 4

  5. Validation_Under_Interventions Validation_Under_Interventions Public

    Performance evaluation of predictions under interventions using longitudinal observational data

    R 4

  6. DynamicPrediction-book DynamicPrediction-book Public

    Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)

    R 4

Repositories

Showing 10 of 16 repositories
  • FineGrayCovarMI Public

    Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (under review)

    survival-lumc/FineGrayCovarMI’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Nov 22, 2024
  • AdjCuminc Public

    Performing covariate adjustment on cumulative incidence curves for competing risks data, and comparing various approaches to covariate adjustment via simulation.

    survival-lumc/AdjCuminc’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Nov 17, 2024
  • CausalMultistate Public

    Code accompanying the manuscript "Extending multistate models with g-computation to evaluate treatment delay"

    survival-lumc/CausalMultistate’s past year of commit activity
    R 0 0 0 0 Updated Nov 11, 2024
  • ValidationCompRisks Public

    Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)

    survival-lumc/ValidationCompRisks’s past year of commit activity
    R 25 GPL-3.0 10 0 0 Updated Sep 17, 2024
  • AdvancedSurvival-course Public

    Landing site for 2024 course "Advanced Survival Analysis", given in Leiden (the Netherlands).

    survival-lumc/AdvancedSurvival-course’s past year of commit activity
    CSS 0 0 0 0 Updated Aug 25, 2024
  • FineGrayDGM Public

    Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (2024, JRSS-A)

    survival-lumc/FineGrayDGM’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Jun 4, 2024
  • DynamicPrediction-book Public

    Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)

    survival-lumc/DynamicPrediction-book’s past year of commit activity
    R 4 0 1 0 Updated Apr 2, 2024
  • Validation_Under_Interventions Public

    Performance evaluation of predictions under interventions using longitudinal observational data

    survival-lumc/Validation_Under_Interventions’s past year of commit activity
    R 4 0 0 0 Updated Nov 13, 2023
  • ImmuneReconstJM Public

    Code and supplementary materials for the manuscript "Joint models quantify associations between T-cell kinetics and allo-immunological events after allogeneic stem cell transplantation and subsequent donor lymphocyte infusion" (2023, Frontiers in Immunology)

    survival-lumc/ImmuneReconstJM’s past year of commit activity
    TeX 2 GPL-3.0 0 0 0 Updated Jul 24, 2023
  • ReviewHaemaMissing Public

    Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)

    survival-lumc/ReviewHaemaMissing’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated May 29, 2023
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