Improved actions #52
Workflow file for this run
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| name: Build & test plugin | |
| on: | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free Disk Space (Ubuntu only) | |
| uses: jlumbroso/free-disk-space@main | |
| - name: Set up MPI | |
| uses: mpi4py/setup-mpi@master | |
| with: | |
| mpi: 'openmpi' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget gcc g++ make | |
| - name: Install Miniconda | |
| uses: conda-incubator/setup-miniconda@main | |
| with: | |
| miniconda-version: "latest" | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: scipion3 | |
| python-version: "3.8" | |
| - name: Install Scipion | |
| working-directory: ${{ github.workspace }}/../ | |
| run: | | |
| pip cache purge | |
| pip install --user scipion-installer | |
| python3 -m scipioninstaller -conda -noXmipp -noAsk scipion | |
| - name: Install scipion-chem (in branch ${{ github.head_ref }} if exists, then tries ${{ github.base_ref }}, finally, default branch) | |
| working-directory: ${{ github.workspace }}/../ | |
| env: | |
| REPO_NAME: scipion-chem | |
| SOURCE_BRANCH_NAME: ${{ github.head_ref }} | |
| TARGET_BRANCH_NAME: ${{ github.base_ref }} | |
| run: | | |
| git clone https://github.com/scipion-chem/$REPO_NAME.git | |
| if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $SOURCE_BRANCH_NAME | wc -l) -eq 1 ]; then | |
| cd $REPO_NAME && git checkout $SOURCE_BRANCH_NAME && cd - | |
| else | |
| if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $TARGET_BRANCH_NAME | wc -l) -eq 1 ]; then | |
| cd $REPO_NAME && git checkout $TARGET_BRANCH_NAME && cd - | |
| fi | |
| fi | |
| scipion/scipion3 installp -p $REPO_NAME --devel | |
| - name: Checkout repository | |
| uses: actions/checkout@main | |
| with: | |
| ref: ${{ github.head_ref }} | |
| - name: Install plugin from pull request | |
| working-directory: ${{ github.workspace }} | |
| run: ../scipion/scipion3 installp -p . --devel | |
| - name: Run tests | |
| working-directory: ${{ github.workspace }}/../ | |
| env: | |
| TEST_MODULE: ${{ vars.FOLDER_WITH_VERSION }} | |
| run: | | |
| pip install scipion_testrunner | |
| scipion_testrunner ./scipion/scipion3 $TEST_MODULE --noGpu --testData=${{ github.workspace }}/$TEST_MODULE/testData.json |