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Lack of seek error checking in multithreaded BGZF files

Status: Open.

#1889 In samtools/htslib;

· jmarshall opened on Feb 15, 2025

error: ‘str2int’ undeclared (first use in this function)

Status: Open.

#1888 In samtools/htslib;

· grenaud opened on Feb 14, 2025

Add option to disable periodic hflush during multithreaded writes?

Status: Open.

#1869 In samtools/htslib;

· julianhess opened on Jan 2, 2025

Inconsistency in parsing @SQ headers with multiple LN: and SN: tags

Status: Open.

#1866 In samtools/htslib;

· daviesrob opened on Dec 12, 2024

bcftools consensous fails to write to GCP

Status: Open.

#1865 In samtools/htslib;

· Ieremie opened on Nov 11, 2024

HTSlib does not support VCF v4.4's explicit first phasing indicator

Status: Open.

#1847 In samtools/htslib;

· jmarshall opened on Oct 5, 2024

The htscodecs version.h is not built unless its .git is present; no instructions to prepare a working tarball

Status: Open.

#1846 In samtools/htslib;

· adamnovak opened on Oct 3, 2024

VCF 4.4/4.5 specs: rlen should be computed rather than populated from END INFO field

Status: Open.

#1820 In samtools/htslib;

· davmlaw opened on Aug 12, 2024

Google Cloud Storage hFILE not using multipart / resumable uploads or downloads for reliability

Status: Open.

#1814 In samtools/htslib;

· pettyalex opened on Jul 31, 2024

 ·  

wishlist

No warning on messed up VCF

Status: Open.

#1778 In samtools/htslib;

· pd3 opened on Apr 30, 2024

todo: Improve --regions-overlap variant

Status: Open.

#1746 In samtools/htslib;

· pd3 opened on Feb 9, 2024

htslib in pysam.fetch on S3 Bucket

Status: Open.

#1670 In samtools/htslib;

· StephanHolgerD opened on Sep 7, 2023