2.2.0 (2025-02-26)

Features

• FASTA/FASTQ unification (#433) (734d6d1)
• position-specific scoring matrix: support inputs with ambiguous monomers in from_seqs (#616) (050b154)
• Reverse qgrams iterator (#521) (46382ba)
• Write fasta with fix line width (#490) (2e66911)

Dependencies

• update ordered-float requirement from 4.2 to 5.0 (#623) (8e188f5)
• update thiserror requirement from 1 to 2 (#608) (68fd94f)

2.1.0 (2025-02-24)

Features

• Implementing From and TryInto for Phase (#618) (12dd1bd)

Dependencies

• update itertools requirement from >=0.8, <0.14 to >=0.8, <0.15 (#614) (58d11cd)
• update petgraph requirement from >=0.4, <0.7 to >=0.4, <0.8 (#615) (a8fff8d)
• update rand requirement from >=0.7.3, < 0.9 to >=0.7.3, < 0.10 (#617) (1ec607f)
• update statrs requirement from >= 0.11, < 0.18 to >= 0.11, < 0.19 (#610) (5d90a0d)

2.0.3 (2024-09-11)

Dependencies

• update ndarray requirement from >=0.15, <0.16 to >=0.15, <0.17 (#599) (6f02382)

2.0.2 (2024-09-11)

Bug Fixes

• POA reverse edge fix (#575) (a212946)

2.0.1 (2024-07-22)

Bug Fixes

• Add missing method to access phase of gff record (#597) (72910e8)

Dependencies

• update bit-set requirement from 0.5 to 0.8 (#596) (29a85fb)
• update statrs requirement from >= 0.11, < 0.17 to >= 0.11, < 0.18 (#595) (9c352c0)
• update strum requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27 (#588) (d53c9d1)

2.0.0 (2024-07-03)

⚠ BREAKING CHANGES

• Refactor misleadingly named method io::gff::Record::frame to phase and improve typing (#593)

refactor

• Refactor misleadingly named method io::gff::Record::frame to phase and improve typing (#593) (216d925)

Bug Fixes

• Fix clippy warnings (#584) (68791f3)

Dependencies

• update itertools requirement from >=0.8, <0.12 to >=0.8, <0.13 (#562) (a79e5c9)
• update itertools requirement from >=0.8, <0.13 to >=0.8, <0.14 (#590) (973ac0c)
• update multimap requirement from >=0.6, <0.10 to >=0.6, <0.11 (#587) (fe8f10c)
• update ordered-float requirement from 3.1 to 4.2 (#565) (3b87ecd)
• update strum_macros requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27 (#586) (9912528)

Features

• POA semi-global, local, and custom alignment (#569) (440cb1c)

Features

• Add pretty output for poa (#563) (8b8eea6)

Bug Fixes

• minimum ndarray version is 0.15 (#558) (2e3aff0)

Features

• memory efficient banded poa (#532) (f03ee1c)

Bug Fixes

• include doctests in the test coverage of code that tarpaulin calculates (#533) (29cf0f5)
• make dependabot commit message follow conventional commits (#542) (bb88281)

Performance Improvements

• improve alignment::distance::levenshtein and alignment::distance::bounded_levenshtein on strrings where distance is small (#522) (da7daea)