Aggregate results from bioinformatics analyses across many samples into a single report.

Test data for MultiQC. See https://github.com/ewels/MultiQC

Novel Adjacency Identification with Barcoded Reads

Bam Error Stats Tool (best): analysis of error types in aligned reads.

Collections of library structure and sequence of popular single cell genomic methods

Plot structural variant signals from many BAMs and CRAMs

Conda recipes for the bioconda channel.

Standalone tool and library allowing to work with barcoded linked-reads

Fast & accurate alignment of barcoded short-reads

Deep learning framework for SV calling and genotyping

Diploid personal genome assembly and comprehensive variant detection based on linked-reads

software tools for haplotype assembly from sequence data

Read-based phasing of genomic variants, also called haplotype assembly

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

material related to the genetech courses

Novel insertion detection with 10X reads

All pairs search and sequence clustering