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KrakenUniq: ram_chunk_size not passed to classify.

bugSomething isn't workingSomething isn't working

Status: Open.

#611 In nf-core/taxprofiler;

· muniheart opened on May 1, 2025

Taxprofiler profiles/subworkflows have various Nextflow syntax errors according to new extension rules

bugSomething isn't workingSomething isn't working

Status: Open.

#606 In nf-core/taxprofiler;

· jfy133 opened on Apr 30, 2025

KrakenUniq: Allow <code>ram_chunk_size</code> to be set in database file.

Status: Open.

#603 In nf-core/taxprofiler;

· muniheart opened on Apr 27, 2025

Provide custom script for merging MetaPhlAn tables for better sample name handling

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#574 In nf-core/taxprofiler;

· alexhbnr opened on Jan 30, 2025

Add option for BBTools Clumpify optical deduplication

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#547 In nf-core/taxprofiler;

· funnell opened on Oct 22, 2024

Create a samplesheet for mag

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#542 In nf-core/taxprofiler;

· sofstam opened on Oct 10, 2024

Create samplesheets for differentialabundance

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#541 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Oct 10, 2024

New feature: melon - long reads profiler

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#517 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Aug 30, 2024

 ·  

1.3.0 - Crazy Corgi

Add the interactive visualisation tool GRIMER

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#516 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Aug 19, 2024

 ·  

1.5.0 - Extravagant Estrela

Have checks that if sub-parameter activate but main parameter not, error or give warning

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#513 In nf-core/taxprofiler;

· jfy133 opened on Aug 8, 2024

Add support for metacache

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#506 In nf-core/taxprofiler;

· ChillarAnand opened on Jul 5, 2024

 ·  

1.3.0 - Crazy Corgi

Add CAT/BAT/RAT for long reads

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#504 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Jun 24, 2024