Search results

Replace custom gtf filter code with nf-core module

quality & consistencyimprove quality and reduce maintenance burdenimprove quality and reduce maintenance burden

Status: Open.

#465 In nf-core/scrnaseq;

· grst opened on Apr 24, 2025

Error running cellrangerarc workflow with 10x Multiome data

bugSomething isn't workingSomething isn't working

Status: Open.

#463 In nf-core/scrnaseq;

· maggiebr0wn opened on Apr 23, 2025

Inquiry about Parameters for snRNA-seq Analysis

Status: Open.

#462 In nf-core/scrnaseq;

· Yaxiong293 opened on Mar 31, 2025

Use different json schemas for different aligners

quality & consistencyimprove quality and reduce maintenance burdenimprove quality and reduce maintenance burden

Status: Open.

#461 In nf-core/scrnaseq;

· grst opened on Mar 31, 2025

no exit code for CONCAT_H5AD jobs

bugSomething isn't workingSomething isn't working

Status: Open.

#460 In nf-core/scrnaseq;

· nick-youngblut opened on Mar 29, 2025

Support for 10x v3.1 chemistry

enhancementNew feature or requestNew feature or request

Status: Open.

#457 In nf-core/scrnaseq;

· mossjacob opened on Mar 26, 2025

MultiOmeGEX on GCP=> no space left on device

bugSomething isn't workingSomething isn't working

Status: Open.

#456 In nf-core/scrnaseq;

· nick-youngblut opened on Mar 25, 2025

docs on cellranger_index path

enhancementNew feature or requestNew feature or request

Status: Open.

#455 In nf-core/scrnaseq;

· nick-youngblut opened on Mar 25, 2025

JSON schema: Scrnaseq

Status: Open.

#454 In nf-core/scrnaseq;

· lee-t opened on Mar 24, 2025

Trimming

enhancementNew feature or requestNew feature or request

Status: Open.

#450 In nf-core/scrnaseq;

· milos7250 opened on Mar 18, 2025

Cellranger must have input from fasta and gtf file

bugSomething isn't workingSomething isn't working

Status: Open.

#449 In nf-core/scrnaseq;

· wzheng0520 opened on Mar 13, 2025

Cellranger multi returning empty barcodes.tsv.gz and matrix.mtx.gz

bugSomething isn't workingSomething isn't working

Status: Open.

#448 In nf-core/scrnaseq;

· ninamurrell opened on Mar 13, 2025