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JSON schema: Kmermaid

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#165 In nf-core/kmermaid;

· jen-reeve opened on Mar 25, 2025

Pipeline has 2 releases, but default branch is dev

bugSomething isn't workingSomething isn't working

Status: Open.

#141 In nf-core/kmermaid;

· maxulysse opened on Apr 26, 2021

TEMPLATE needs cleaning

bugSomething isn't workingSomething isn't working

Status: Open.

#139 In nf-core/kmermaid;

· ewels opened on Mar 24, 2021

Add hash2kmer.py code to get potential genes and sequences for each k-mer hash

enhancementNew feature or requestNew feature or request

Status: Open.

#134 In nf-core/kmermaid;

· olgabot opened on Mar 16, 2021

KMERMAID: Convert all parameter docs to JSON schema

enhancementNew feature or requestNew feature or request

Status: Open.

#133 In nf-core/kmermaid;

· apeltzer opened on Mar 16, 2021

Update to sourmash 4.0

enhancementNew feature or requestNew feature or request

Status: Open.

#130 In nf-core/kmermaid;

· olgabot opened on Mar 9, 2021

Add option to remove hashes, e.g. ribosomal seqs

enhancementNew feature or requestNew feature or request

Status: Open.

#127 In nf-core/kmermaid;

· olgabot opened on Jan 11, 2021

Separate cell barcode counting and filtering

enhancementNew feature or requestNew feature or request

Status: Open.

#126 In nf-core/kmermaid;

· olgabot opened on Jan 6, 2021

Add option to query newly created signatures with "sourmash search"

Status: Open.

#118 In nf-core/kmermaid;

· olgabot opened on Oct 29, 2020

add a new release for kmermaid

Status: Open.

#109 In nf-core/kmermaid;

· pranathivemuri opened on Oct 20, 2020

Add option to make per-cell bam files

Status: Open.

#96 In nf-core/kmermaid;

· olgabot opened on Aug 17, 2020

Add <code>sourmash index</code> option

Status: Open.

#76 In nf-core/kmermaid;

· olgabot opened on May 13, 2020