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BED parsing not fully compliant with spec

enhancement

testing

Status: Open.

#189 In mdshw5/pyfaidx;

· mdshw5 opened on May 18, 2022

Make line endings survive round-trip

enhancement

known

might do

Status: Open.

#170 In mdshw5/pyfaidx;

· mdshw5 opened on Dec 8, 2020

Enable pyfaidx to accept gcp paths for compressed fasta files

Status: Open.

#161 In mdshw5/pyfaidx;

· archanaraja opened on May 21, 2020

Index failes if more than one empty line

bug

Status: Open.

#160 In mdshw5/pyfaidx;

· openpaul opened on Feb 6, 2020

BGZip slow performance near end of chromosomes

Status: Open.

#153 In mdshw5/pyfaidx;

· davmlaw opened on Jul 26, 2019

Rewrite documentation

Status: Open.

#136 In mdshw5/pyfaidx;

· mdshw5 opened on Feb 5, 2018

Sequence.gc methods that consider IUPAC nucleotide ambiguity

Status: Open.

#128 In mdshw5/pyfaidx;

· mdshw5 opened on Nov 13, 2017

Extend Faidx so it can be backed by memory mapped file

enhancement

help-wanted

Status: Open.

#95 In mdshw5/pyfaidx;

· dhauge opened on Aug 4, 2016

--gtf option to read regions from transcript definitions

enhancement

help-wanted

Status: Open.

#90 In mdshw5/pyfaidx;

· mdshw5 opened on Feb 23, 2016

Filter [:,] from region string when using UCSC style regions

Status: Open.

#89 In mdshw5/pyfaidx;

· mdshw5 opened on Jan 8, 2016

Support for indels in FastaVariant class

help-wanted

Status: Open.

#84 In mdshw5/pyfaidx;

· danielecook opened on Dec 17, 2015