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  1. NoiseCancellingRepeatFinder NoiseCancellingRepeatFinder Public

    Noise-Cancelling Repeat Finder

    Python 24 4

  2. T2T_primate_XY T2T_primate_XY Public

    Python 12

  3. DiscoverY DiscoverY Public

    K-mer based classifier for Y-contig identification from Whole Genome Assemblies

    Jupyter Notebook 11 5

  4. RecoverY RecoverY Public

    K-mer based read classification for Y-chromosome specific sequencing and assembly

    Python 9 5

  5. overlaps overlaps Public

    Jupyter Notebook 5

  6. Mito_nuclear_incompatibility Mito_nuclear_incompatibility Public

    Repository containing data files and scripts for the mito-nuclear paper

    q 4 2

Repositories

Showing 10 of 43 repositories
  • GreatApeT2T-G4s Public

    Evolutionary Dynamics of G-Quadruplexes across Great Ape Telomere-to-Telomere Genomes

    makovalab-psu/GreatApeT2T-G4s’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 19, 2024
  • mapsea Public

    Mapping And Prediction of Shared Elements in Alignments

    makovalab-psu/mapsea’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 17, 2024
  • g4Discovery Public

    Scripts for annotating/predicting G-Quadruplexes (G4s) in a genome sequence, combining pqsfinder and G4Hunter.

    makovalab-psu/g4Discovery’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 17, 2024
  • AmpliCoNE-tool Public

    AmpliCoNE: Ampliconic Copy Number Estimator

    makovalab-psu/AmpliCoNE-tool’s past year of commit activity
    Python 1 1 3 0 Updated Nov 4, 2024
  • human_mtDNA_duplexSeq Public
    makovalab-psu/human_mtDNA_duplexSeq’s past year of commit activity
    0 AGPL-3.0 0 0 0 Updated Oct 23, 2024
  • T2T_primate_nonB Public
    makovalab-psu/T2T_primate_nonB’s past year of commit activity
    0 0 0 0 Updated Sep 12, 2024
  • T2T_primate_autosomes Public

    Code from the Makova lab for the T2T primates autosome paper.

    makovalab-psu/T2T_primate_autosomes’s past year of commit activity
    Python 0 0 0 0 Updated Aug 5, 2024
  • T2T_primate_XY Public
    makovalab-psu/T2T_primate_XY’s past year of commit activity
    Python 12 MIT 0 1 0 Updated Jun 7, 2024
  • mitonuclear_expression Public

    This is a repository for the article "Exploring the effects of mitonuclear interactions on mitochondrial DNA gene expression in humans" (doi: 10.3389/fgene.2022.797129).

    makovalab-psu/mitonuclear_expression’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 11, 2024
  • YAG_analysis Public

    Analysis scripts for "Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome in Great Apes"

    makovalab-psu/YAG_analysis’s past year of commit activity
    Raku 0 1 0 0 Updated Jul 31, 2023
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