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  1. instaGRAAL Public

    Large genome reassembly based on Hi-C data, continuation of GRAAL

    Cuda 40 9

  2. metaTOR Public

    Metagenomic binning based on Hi-C data

    Python 26 10

  3. hicstuff Public

    Forked from baudrly/hicstuff

    Simple library/pipeline to generate and handle Hi-C data.

    Python 37 7

  4. chromosight Public

    Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

    Python 63 9

  5. serpentine Public

    Local, normalization-free contact map binning

    Python 5 3

Repositories

Showing 10 of 19 repositories
  • metaTOR Public

    Metagenomic binning based on Hi-C data

    Python 26 GPL-3.0 10 2 0 Updated Feb 24, 2025
  • hicberg Public Forked from sebgra/hicberg

    Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction

    Python 0 1 0 0 Updated Dec 30, 2024
  • hicstuff Public Forked from baudrly/hicstuff

    Simple library/pipeline to generate and handle Hi-C data.

    Python 37 BSD-3-Clause 8 6 0 Updated Nov 19, 2024
  • instaGRAAL Public

    Large genome reassembly based on Hi-C data, continuation of GRAAL

    Cuda 40 GPL-3.0 9 9 0 Updated Mar 20, 2024
  • HiContacts Public Forked from js2264/HiContacts

    HiContacts: R interface to cool files and analysis of Hi-C contacts

    R 1 1 0 0 Updated Jan 27, 2024
  • chromosight_analyses_scripts Public

    Codes used to perform analyses in the Chromosight publication

    Python 4 0 0 0 Updated Nov 17, 2023
  • transcription_T7_analysis Public Forked from ABignaud/transcription_T7_analysis

    In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.

    Python 0 BSD-3-Clause 1 0 0 Updated Oct 1, 2023
  • bacchus Public Forked from ABignaud/bacchus

    Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)

    Python 0 BSD-3-Clause 2 0 0 Updated Sep 4, 2023
  • chromosight Public

    Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

    Python 63 9 4 0 Updated Dec 16, 2022
  • GRAAL Public

    (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)

    Python 14 9 8 4 Updated Nov 22, 2022

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