Skip to content
View iquasere's full-sized avatar
💫
PhDing
💫
PhDing

Highlights

  • Pro

Block or report iquasere

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
iquasere/README.md

Hi there! 👋

I am a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1818 commits        █████████░░░░░░░░░░░░░░░░   37.17 % 
🌆 Daytime                2100 commits        ███████████░░░░░░░░░░░░░░   42.94 % 
🌃 Evening                790 commits         ████░░░░░░░░░░░░░░░░░░░░░   16.15 % 
🌙 Night                  183 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   03.74 % 

📅 I'm Most Productive on Wednesday

Monday                   862 commits         ████░░░░░░░░░░░░░░░░░░░░░   17.62 % 
Tuesday                  895 commits         █████░░░░░░░░░░░░░░░░░░░░   18.30 % 
Wednesday                1457 commits        ███████░░░░░░░░░░░░░░░░░░   29.79 % 
Thursday                 700 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.31 % 
Friday                   538 commits         ███░░░░░░░░░░░░░░░░░░░░░░   11.00 % 
Saturday                 41 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.84 % 
Sunday                   398 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   08.14 % 

📊 This Week I Spent My Time On

💬 Programming Languages: 
Bash                     5 hrs 17 mins       █████████████░░░░░░░░░░░░   50.41 % 
YAML                     3 hrs 41 mins       █████████░░░░░░░░░░░░░░░░   35.14 % 
Docker                   54 mins             ██░░░░░░░░░░░░░░░░░░░░░░░   08.68 % 
Text                     19 mins             █░░░░░░░░░░░░░░░░░░░░░░░░   03.17 % 
Other                    13 mins             █░░░░░░░░░░░░░░░░░░░░░░░░   02.18 % 

🐱‍💻 Projects: 
hpc_project              7 hrs 15 mins       █████████████████░░░░░░░░   69.26 % 
virtual_hpc              3 hrs 13 mins       ████████░░░░░░░░░░░░░░░░░   30.74 % 

I Mostly Code in Python

Python                   11 repos            ██████████░░░░░░░░░░░░░░░   39.29 % 
HTML                     7 repos             ██████░░░░░░░░░░░░░░░░░░░   25.00 % 
Java                     3 repos             ███░░░░░░░░░░░░░░░░░░░░░░   10.71 % 
Shell                    2 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   07.14 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   03.57 % 

Last Updated on 30/11/2024 18:52:42 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 2

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 31 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 52 6