- Python 3.6 or later
- R 4.0.2 or later
- git
sudo apt update
sudo apt install python3
sudo apt install r-base
sudo apt install gitIn order to install the Python dependencies you need pip and venv modules.
sudo apt install python3-pip python3-venvDirectly from GitHub:
cd $HOME
git clone https://github.com/inab/vre_progeny_executor.git
cd vre_progeny_executorCreate the Python environment:
python3 -m venv venv
source venv/bin/activate
pip install --upgrade pip wheel
pip install -r requirements.txt./VRE_RUNNER --config tests/basic/config.json --in_metadata tests/basic/in_metadata.json --out_metadata out_metadata.json --log_file VRE_RUNNER.log- © 2020-2022 Barcelona Supercomputing Center (BSC), ES
- © 2020-2022 Heidelberg University Hospital (UKL-HD), DE
Licensed under the Apache License Version 2.0, see the file LICENSE for details.