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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 777 158

  2. scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 298 47

Repositories

Showing 10 of 367 repositories
  • vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 136 MIT 18 18 (1 issue needs help) 11 Updated Mar 1, 2025
  • pic-sure-metadata-curation Public

    Parse and generate variable-level data to be exposed through the search interface.

    SAS 2 Apache-2.0 2 0 0 Updated Feb 28, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    Python 0 Apache-2.0 0 0 0 Updated Feb 28, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    TypeScript 1 Apache-2.0 0 0 11 Updated Feb 28, 2025
  • pic-sure-hpds Public
    Java 3 Apache-2.0 6 0 8 Updated Feb 28, 2025
  • picsure-dictionary-etl Public
    Java 0 Apache-2.0 0 0 0 Updated Feb 28, 2025
  • viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 298 MIT 47 47 (1 issue needs help) 9 Updated Feb 28, 2025
  • pic-sure-bdc-release-control Public
    1 Apache-2.0 8 0 0 Updated Feb 28, 2025
  • i2b2v2-webclient Public
    JavaScript 2 4 1 0 Updated Feb 28, 2025
  • biodata_catalyst_stigmatizing_variables Public
    Jupyter Notebook 1 Apache-2.0 0 0 1 Updated Feb 27, 2025
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