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process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

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dwpeng/filterx

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filterx

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A fast command-line tool to filter lines by column-based expression.

Features

  • 🚀 Filter lines by column-based expression
  • 🎨 Support multiple input formats e.g. vcf/sam/fasta/fastq/gff/bed/csv/tsv
  • 🎉 Cross-platform support
  • 📦 Easy to install
  • 📚 Rich documentations

Installation

Using pip or cargo to install filterx:

pip install filterx
cargo install filterx

Download the latest release from releases.

Documentation

filterx have rich documentations, you can find them in docs.

filterx has a built-in help system, you can use filterx info --list to list all available built-in functions, and use filterx info <command> to get help for a specific function.

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