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Reconstruction of synaptic structures in electron microscopy
A python package for fitting splines.
A minimal package for video stablization
Python library for loading and using triangular meshes.
Running compute-intense parts of BigStitcher distributed
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Guides and code for 3D nuclear instance segmentation
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Typed interactions with the GitHub API v3
[ICML 2024] Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Model
scikit-fmm is a Python extension module which implements the fast marching method.
Course and exercises on deep learning for microscopy image analysis
Reader, analyzer, and viewer of MINFLUX raw data.
simplify the handling of large sets of Euler angles in Python
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Multi-Object Tracker using Integer Linear Equations
Segment Anything for Microscopy