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Multiple Issues in vcfanno 0.3.5: [[postannotation]] Parsing, GENE not found in INFO, and non-bgzip Fallback

Status: Open.

#162 In brentp/vcfanno;

· MolPath-Bioinfo opened on Mar 14, 2025

QUAL value 256 is automatically set to '.'

Status: Open.

#161 In brentp/vcfanno;

· sjurug opened on Feb 28, 2025

Long shot: VEP-cache compatibility

Status: Open.

#160 In brentp/vcfanno;

· matthdsm opened on Jan 29, 2025

QUAL & GNOMAD rounded out

Status: Open.

#159 In brentp/vcfanno;

· jomoxi opened on Jul 18, 2024

Tolerant VCF parsing

Status: Open.

#156 In brentp/vcfanno;

· drtconway opened on Aug 22, 2023

Resolving ambiguity in multiallelic sites

Status: Open.

#155 In brentp/vcfanno;

· e-271 opened on Aug 15, 2023

vcfanno fails to parse header of bcf file

Status: Open.

#154 In brentp/vcfanno;

· edg1983 opened on Apr 12, 2023

vcfanno doesn't annotate sites that are polymorphic in query vcf but fixed for reference allele in annotation vcf

Status: Open.

#152 In brentp/vcfanno;

· arpfennig opened on Feb 9, 2023

support for GWAS summary TSV files

Status: Open.

#142 In brentp/vcfanno;

· darked89 opened on Jul 12, 2021

Annotation header Ex. SnpEffVersion

Status: Open.

#140 In brentp/vcfanno;

· raonyguimaraes opened on Mar 21, 2021

Ability to add fallback / default values for fields where annotation source is missing

Status: Open.

#139 In brentp/vcfanno;

· ssadedin opened on Mar 7, 2021

Post-Annotation for new SpliceAI VCFs

Status: Open.

#138 In brentp/vcfanno;

· Phillip-a-richmond opened on Feb 22, 2021