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//This is about how to run the script.

Original Data: GSE16405_family.soft

Input file:

  1. GSE16405_family.soft - downloaded from GEO

Output file:

  1. WBPaper00036135CMinus.ace -- For CitaceMinus
  2. WBPaper00036135MrData.txt -- To be included in mySQL database for mr_data.

How to run the script: ./mr_results_WBP00036135.pl

Output:

wen@athena:~/LargeDataSets/Microarray/NewDataForWS221/36135Fensgard$ ./mr_results_WBP00036135.pl Connecting to database...done 22573 Affymetrix (GPL200) Microarray_results objects found Cannot find probe for 173169_at. Cannot find probe for 173184_at.

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Scripts and documentations on the curation of microarray data in WormBase

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