iTOL: Interactive Tree Of Life
Welcome to iTOL v7 Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic and other trees. Manage and visualize your trees directly in the browser, and annotate them with various datasets. Tree annotation made easy. Annotate your trees directly from Microsoft Excel, LibreOffice or Google Sheets, or use the integrated web dataset editor. Advanced users
幾霜::残日録::2008/06/05 (木)
ã“れも考ãˆã¦ã¿ãŸã‚‰ã•ã»ã©é›£ã—ã„ã“ã¨ã¯ãªã‹ã£ãŸã€‚ã¾ãšæŒ‡å®šã•ã‚ŒãŸå¤–群ã®OTUã‚’å…¨ã¦å«ã‚€ã‚¯ãƒ¬ãƒ¼ãƒ‰ã®ä¸ã§æœ€ã‚‚æµ…ã„クレードを探ã™ã€‚ãã®ã‚¯ãƒ¬ãƒ¼ãƒ‰ç›´ä¸‹ã®æžã¨ã‚¯ãƒ¬ãƒ¼ãƒ‰ç›´ä¸Šã®æžãŒæ–°ã—ã„æœ‰æ ¹ç³»çµ±æ¨¹ã®æ ¹ç‚¹ç›´ä¸‹ã®æžã¨ãªã‚‹ã€‚クレード直下ã®æžã¨ãã“ã«ç¹‹ãŒã£ã¦ã„るクレードを出力ã™ã‚‹æœ‰æ ¹ç³»çµ±æ¨¹ã«åŠ ãˆãŸã‚‰ã€é€†ã«ã‚¯ãƒ¬ãƒ¼ãƒ‰ç›´ä¸Šã®æžã‚’é¡ã£ã¦ã„ãã¤ã¤ç¶šã‘ã¦åŠ ãˆã¦ã„ã。入力系統樹ã®æ ¹ç‚¹ã¾ã§åˆ°é”ã—ãŸã‚‰ã€ãŸã©ã£ã¦ããŸã‚¯ãƒ¬ãƒ¼ãƒ‰ä»¥å¤–ã‚’åŠ ãˆã¦å®Œæˆã€‚ãŠã—ã¾ã„。 ã¾ã実際ã«å®Ÿè£…ã™ã‚‹ã®ã¯ã‘ã£ã“ã†é¢å€’ãªã‚“ã ãŒã€Treefinderã®ç³»çµ±æ¨¹èªã¿è¾¼ã¿ã¨å‡¦ç†ã£ã¦çµæ§‹é…ã„ã®ã§è‡ªå‰ã§å®Ÿè£…ã—ãŸæ–¹ãŒè‰¯ã„ã‹ã‚‚ã—ã‚Œãªã„。
Main Page - Phyloinformatics
Google Summer of Code 2008 We are participating again this year as a mentoring organization to participate in the Google Summer of Codeâ„¢ program. Please see our Phyloinformatics Summer of Code page for 2008 for project ideas, mentors, and other information about us. Previous years 2007 NESCent and Google project pages. Hackathons What is a hackathon? A hackathon is a hands-on software development
TreeView X
Note that the code for TreeView X is now available from Google Code. TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other programs). It has a subset of the functionality of the version of TreeView available for th
Bayes 法ã«ã‚ˆã‚‹ç³»çµ±è§£æžï¼MrBayes 3.0b4
ã“ã“ã«ç¤ºã—ãŸæ–¹æ³•ã¯ã€ã»ã¨ã‚“ã©ä¸€å¤œæ¼¬ã‘勉強ã—ãŸå†…容ã§åˆå¿ƒè€…å‘ã‘ã¨è¨€ãˆã‚‹ã€‚ 当然ãªãŒã‚‰è§£æžã®è¨å®šãªã©ã¯ã•ã‚‰ã«ç´°ã‹ãè¨å®šã§ãã‚‹ã®ã§ã€å¿…è¦ãªã‚‰ã°å‚考書・説明書ãªã©ã‚’調ã¹ã‚‹ã“ã¨ã‚’勧ã‚る。 ç†è€…㯠Windows XP ã®ç’°å¢ƒã§ç³»çµ±æ¨¹ä½œæˆã‚’è¡Œã£ãŸãŒï¼Œä»–ã® Windows ã§ã‚‚本質的ãªå·®ã¯ãªã„ã¨æ€ã‚れる。 ãªãŠ Mac PC ã§è§£æžã‚’è¡Œã†å ´åˆã«ã¯ï¼Œä¸»ã¨ã—㦠MrModeltest ã®ä½¿ã„æ–¹ã«å¤§ããªé•ã„ãŒã‚ã‚‹ãŸã‚， ソフトã®èª¬æ˜Žæ–‡ã‚’å‚ç…§ã—ã¦ã„ãŸã ããŸã„。 é‡è¦ 2005å¹´05月17日付ã‘ã§ï¼ŒMrBayes ã®æœ€æ–°ç‰ˆãŒæ›´æ–°ã•ã‚ŒãŸã€‚ ä»Šå›žç™»å ´ã—㟠ver. 3.1 㯠MrBayes 3 ã®åˆã®æ£è¦ç‰ˆã¨ãªã‚‹ã€‚ MrBayes 3.1 ã§ã¯è¤‡æ•°ã®è§£æžï¼ˆé€šå¸¸ã¯ 2 本）をåŒæ™‚ã«è¡Œã†ã“ã¨ã«ã‚ˆã‚Šã€ 得られる樹形ãªã©ã®åŽæŸã®ç¨‹åº¦ã‚’定é‡ã™ã‚‹ã“ã¨ãŒã§ãるよã†ã«ãªã£ãŸã€‚ ã“ã‚Œã¯è§£æžæ™‚é–“ãŒä½™åˆ†ã«ã‹ã‹ã‚‹ã‚‚ã®ã®ã€è§£æžã®ã‚¯ã‚ªãƒªãƒ†ã‚£ã‚’
2006-12-19
ãã®ï¼‘　DDBJã®ã‚¦ã‚§ãƒ–ツールを使ㆠhttp://www.ddbj.nig.ac.jp/search/clustalw-j.html CLUSTALW1.83 FASTAå½¢å¼ã®ãƒ•ã‚¡ã‚¤ãƒ«ã‚’指定ã€ã‚‚ã—ãã¯ãƒšãƒ¼ã‚¹ãƒˆã™ã‚‹ã€‚ FASTAå½¢å¼ >é…列å MAISIVLH...... >é…列å MSKINVAL....... Tree,BOOTSTRAP NJ 法 (近隣çµåˆæ³•ï¼‰ã«ã‚ˆã‚‹ç³»çµ±æ¨¹ã‚’計算ã•ã›ã‚‹ã“ã¨ãŒã§ãる。 系統樹計算時ã«ä½¿ç”¨ã™ã‚‹ correction を指定å¯èƒ½ã€‚デフォルト㯠Kimura。アミノ酸アライメントã®éš›ã¯p-distanceも指定ã§ãる。 出力ã¯Phylipå½¢å¼ã§ã€Treeã‚’æç”»ã™ã‚‹ãƒ—ãƒã‚°ãƒ©ãƒ ã¯åˆ¥ã«ç”¨æ„ã™ã‚‹å¿…è¦ãŒã‚る。（後述） ãã®ï¼’　GENOMENETã®ã‚¦ã‚§ãƒ–ツールを使ㆠhttp://align.genome.jp/ CLUSTALW1.83 FASTAå½¢å¼ã®ãƒ•ã‚¡ã‚¤ãƒ«ã‚’指定
phylostat1
----------------------------------------- 系統推定ã«é–¢ã‚る統計的検定ã«ã¤ã„ã¦ï¼ˆå°Žå…¥ï¼‰ ----------------------------------------- 今回ã®è¬›ç¾©ã§ä½¿ç”¨ã—ã¦ã„ã‚‹ PAUP* version 4.0 ã«ã¯ï¼Œç³»çµ±æŽ¨å®šã«é–¢ã‚ã‚‹ã•ã¾ã–ã¾ãªçµ±è¨ˆå¦çš„検定を行ãªã†ãƒ„ールãŒå‚™ã‚ã£ã¦ã„ã¾ã™ï¼Žãã®ã„ãã¤ã‹ã‚’下記ã«æ•´ç†ã—ã¦ãŠãã¾ã™ï¼Ž PAUP* ã§ç³»çµ±æ¨¹ã®ä¿¡é ¼æ€§è©•ä¾¡ã‚’è¡Œãªã†ãŸã‚ã®ãƒ„ール ------------------------------------------ â—ブーツストラップ（「Bootstrapã€ã‚³ãƒžãƒ³ãƒ‰ï¼‰ ------------------------------------------ 元形質データＤã®åˆ—（形質）ã‹ã‚‰ã€Œé‡è¤‡ã€ã‚’許ã—ã¦åŒæ•°ã ã‘無作為å†æŠ½å‡ºã‚’ã™ã‚‹ã¨ã„ã†è©¦è¡Œã‚’複数回å復ã—（Ｄ1,Ｄ2,...），ãã‚Œãžã‚Œã®
メンテナンス
ãŠçŸ¥ã‚‰ã›
障害
リリースã€éšœå®³æƒ…å ±ãªã©ã®ã‚µãƒ¼ãƒ“スã®ãŠçŸ¥ã‚‰ã›
最新ã®äººæ°—エントリーã®é…ä¿¡
j次ã®ãƒ–ックマーク
kå‰ã®ãƒ–ックマーク
lã‚ã¨ã§èªã‚€
eコメント一覧を開ã
oページを開ã
TreeDyn Overview
Future Data Exchange Standard - evoinfo
nexml - index of /nexml/perl/
NeXML - phylogenetic data as xml
Yufeng Wu | Yufeng Wu's Homepage
http://www.ddbj.nig.ac.jp/search/help/tv-setup.html
Berkeley Phylogenomics Group
http://www.poissonconsulting.ca/radcon/radcon.html
Phylogeny Comparison
http://genomes.urv.es/topd/
Unordered Tree Comparison Based on Cousin Distance
Felsenstein/Kuhner lab
The ohiou.edu domain has been decommissioned | Ohio University
{{#tags}}- {{label}}
{{/tags}}