Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. (Q55076081)

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English	Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris.	scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. (English)

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

0 references

transcriptomics

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Phaseolus vulgaris

object named as

Phaseolus vulgaris

2 references

based on heuristic

inferred from title

1 reference

1 reference

1 reference

1 reference

2-C-methylerythritol 4-phosphate

1 reference

inosine triphosphate

1 reference

1 reference

O-succinyl-L-homoserine

1 reference

(Z)-aconitic acid

1 reference

aldehydo-N-acetyl-D-glucosamine

1 reference

1 reference

(E)-4-hydroxy-3-methoxycinnamaldehyde

1 reference

1 reference

1 reference

4-[(2S,3S)-3-tetradeca-1,3,5,8-tetraenyloxiran-2-yl]butanoic acid

1 reference

1 reference

1 reference

(S)-3-Hydroxytetradecanoyl-CoA; (Acyl-CoA); [M+H]+

1 reference

1 reference

1 reference

3,4-dihydroxyphenylethyleneglycol

1 reference

1 reference

1,2-naphthalenediol

1 reference

sn-glycero-3-phosphocholine

1 reference

1 reference

1 reference

1 reference

1 reference

γ-aminobutyric acid

1 reference

1 reference

Succinic aldehyde

1 reference

(R)-glyceryl 1-phosphate

1 reference

1 reference

4-amino-5-imidazole carboxamide

1 reference

2-deoxy-D-ribofuranose 1-phosphate

1 reference

N-acetyl-L-glutamic acid

1 reference

(5S,8E,10E,12R)-5,12-dihydroxyicosa-6,8,10,14-tetraenoic acid

1 reference

1 reference

aminolevulinic acid

1 reference

1 reference

1 reference

1 reference

pyridoxamine phosphate

1 reference

1 reference

palmitoleic acid

1 reference

1 reference

1 reference

3',4',5,7-tetrahydroxy-3-methoxyflavone

1 reference

1 reference

1 reference

5-hydroxyindole-3-acetic acid

1 reference

1 reference

1 reference

2-hydroxycyclohexan-1-one

1 reference

(2Z)-2-hydroxypenta-2,4-dienoic acid

1 reference

7-methyluric acid

1 reference

(2S)-10-formyltetrahydropteroyl-ξ-glutamic acid

1 reference

2-Butenedioic acid (2Z)-, bis(1-methylethyl) ester

1 reference

alpha-ketoglutaric acid

1 reference

1 reference

flavin mononucleotide

1 reference

1 reference

2-C-methyl-D-erythritol 2,4-cyclic diphosphate

1 reference

9-(5-O-phosphono-beta-D-xylofuranosyl)-9H-purin-6-amine

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

(5S,8R,9S,10R,13S,14R,17S)-17-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-10,13-dimethyl-2,4,5,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6-dione

1 reference

coproporphyrinogen III

1 reference

1-O-sinapoyl-beta-D-glucose

1 reference

S-(Formylmethyl)glutathione

1 reference

(3S,5S,8S,9S,10R,13R,14S,17R)-17-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-3-hydroxy-10,13-dimethyl-1,2,3,4,5,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-6-one

1 reference

1 reference

pseudobaptigenin

1 reference

1 reference

3-methyl-2-oxobutyric acid

1 reference

sphingosine 1-phosphate

1 reference

1 reference

1 reference

1 reference

1 reference

estrone sulfate

1 reference

1 reference

(3S,5S,8S,9S,10R,13R,14R,17S)-3-hydroxy-17-[(2S,3S,5R)-3-hydroxy-5,6-dimethylheptan-2-yl]-10,13-dimethyl-1,2,3,4,5,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-6-one

1 reference

(2S,3R,4R,5S)-2-[(3S,5S,8S,9S,10R,13R,14S,17R)-3-hydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-5,6-dimethylheptane-3,4-diol

1 reference

plant metabolome

1 reference

based on heuristic

inferred from title

Gabriella Pessi

6

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Christian H. Ahrens

object named as

Christian H Ahrens

4

0 references

5

object named as

Nicola Zamboni

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

author name string

Martina Lardi

1

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Yilei Liu

2

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Gaetano Giudice

3

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

language of work or name

0 references

publication date

1 April 2018

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

full work available at URL

https://www.mdpi.com/1422-0067/19/4/1049/pdf?version=1525346648

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.3390/[email protected]

International Journal of Molecular Sciences

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

19

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

4

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

copyright license

Creative Commons Attribution 4.0 International

1 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

online access status

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.3390/[email protected]

access restriction status

1 reference

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Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

NtrC-dependent control of exopolysaccharide synthesis and motility in Burkholderia cenocepacia H111.

1 reference

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18 June 2018

An efficient system for the generation of marked genetic mutants in members of the genus Burkholderia.

1 reference

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18 June 2018

RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots

1 reference

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18 June 2018

Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures

1 reference

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18 June 2018

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation

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18 June 2018

Early signaling, synthesis, transport and metabolism of ureides

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RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt

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18 June 2018

TFBSTools: an R/bioconductor package for transcription factor binding site analysis.

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18 June 2018

RpoN Regulates Virulence Factors of Pseudomonas aeruginosa via Modulating the PqsR Quorum Sensing Regulator.

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18 June 2018

Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production

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18 June 2018

σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111

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18 June 2018

Flavonoids as important molecules of plant interactions with the environment.

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18 June 2018

Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

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Chemistry and biological activities of flavonoids: an overview

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Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective

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Response of Burkholderia cenocepacia H111 to micro-oxia.

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18 June 2018

Transport and metabolism in legume-rhizobia symbioses

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18 June 2018

RND multidrug efflux pumps: what are they good for?

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Flavonoids: biosynthesis, biological functions, and biotechnological applications

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18 June 2018

Role of alternative sigma factor 54 (RpoN) from Vibrio anguillarum M3 in protease secretion, exopolysaccharide production, biofilm formation, and virulence

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18 June 2018

Comparative genomics of rhizobia nodulating soybean suggests extensive recruitment of lineage-specific genes in adaptations

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18 June 2018

Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid.

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18 June 2018

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

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Legume-nodulating betaproteobacteria: diversity, host range, and future prospects.

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18 June 2018

Burkholderia phymatum strains capable of nodulating Phaseolus vulgaris are present in Moroccan soils.

1 reference

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18 June 2018

Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris

1 reference

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18 June 2018

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

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18 June 2018

Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

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18 June 2018

NtrC-dependent regulatory network for nitrogen assimilation in Pseudomonas putida

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18 June 2018

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18 June 2018

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Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation.

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18 June 2018

Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions

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18 June 2018

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18 June 2018

Genetic regulation of biological nitrogen fixation

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18 June 2018

Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli

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18 June 2018

Statistical significance for genomewide studies

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18 June 2018

Nitrogen assimilation and global regulation in Escherichia coli.

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18 June 2018

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Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN).

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18 June 2018

Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbio

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13 August 2018

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Rhizobium nod Gene Inducers Exuded Naturally from Roots of Common Bean (Phaseolus vulgaris L.).

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Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus

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Amino-acid cycling drives nitrogen fixation in the legume–Rhizobium symbiosis

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13 August 2018

Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil

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30 November 2018

Metabolite profiles of nodulated alfalfa plants indicate that distinct stages of nodule organogenesis are accompanied by global physiological adaptations

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Genome-Wide Transcript Analysis ofBradyrhizobium japonicumBacteroids in Soybean Root Nodules

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12 December 2020

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A Comparative Transcriptome Analysis ofRhizobium etliBacteroids: Specific Gene Expression During Symbiotic Nongrowth

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12 December 2020

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Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: investigating the origin and diversity of Burkholderia phymatum and other beta-rhizobia

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The inhibitory effect of flavonoids on interleukin-8 release by human gastric adenocarcinoma (AGS) cells infected with cag PAI (+) Helicobacter pylori

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Burkholderia phymatum improves salt tolerance of symbiotic nitrogen fixation in Phaseolus vulgaris

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24 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

DNA replication and the division cycle in Escherichia coli

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Accumulation of the Phytoalexin Glyceollin I in Soybean Nodules Infected by a Bradyrhizobium japonicum nifA Mutant

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Antimicrobial effects of various flavonoids on Escherichia coli O157:H7 cell growth and lipopolysaccharide production

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

STUDIES ON LYSOGENESIS I

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Identifiers

10.3390/IJMS19041049

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 June 2018

http://europepmc.org/abstract/PMC/5979394

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