20 Questions and Answers About Geology
20 Questions and Answers About Geology
20 Questions and Answers About Geology
Department of Chemistry
CHEMISTRY OF
NATURAL PRODUCTS
Prepared By
Dr. Khalid Ahmad Shadid
Chemistry Department – Islamic University in Madinah
Introduction to Natural Products
Natural products are products from various natural sources, plants,
microbes and animals.
◦ The era of pure compounds (In 1803, a new era in the history of medicine)
◦ Strychnine (1817)
morphine
◦ Quinine and caffeine (1820)
Nicotine Strychnine
◦ Nicotine (1828) caffeine
◦ Atropine (1833)
◦ Cocaine (1855)
Quinine
Atropine Cocaine
4
◦ In the 19th century, the chemical structures
of many of the isolated compounds were
determined
Epibatidine
Penicillin
5
◦ Compounds from natural sources play significant roles in modern
medicine:
Spirea
salicylic acid Aspirin Ibuprofen 6
Overview of a bioassay-guided traditional natural product drug discovery process
Bioassay Chromatographic
Active fraction (s)
fractions
Identification by
spectroscopic techniques,
e.g. UV, IR, MS, NMR
Bioassay
Identified compounds Identified bioactive compound (s) 7
Terpenoids
◦ The odor of a freshly crushed mint leaf, like many plant odors, is
due to the presence in the plant of volatile C10 and C15,
compounds, which are called terpenes.
9
H3C CH2
C
H3C CH2
C CH2 CH
CH3 CH3 H2C CH2
H3C CH3
CH C CH2
CH CH CH
C CH C CH C CH CH C H2C CH
C CH C
H2C C CH CH CH CH CH C
H3C CH3
CH3 CH3
H2C C
CH3
CH2 CH3 -carotene
Limonene
(skin of citrus fruits)
CH3
H3C
C
CH3
CH2 CH2 CH
H2C C CH2
CH2 CH2
C
H2C CH C CH2 H2C C
C CH2 C H3C
H O
CH3 CH2
Camphor
-Selinene (Camphor tree)
10
Classification of Terpenoids
◦ Most natural terpenoid hydrocarbon have the general formula (C5H8)n. They can be classified on the
basis of value of n or number of carbon atoms present in the structure.
◦ Each class can be further subdivided into subclasses according to the number of rings present in the
structure:
i) Acyclic Terpenoids: They contain open structure.
ii) Monocyclic Terpenoids: They contain one ring in the structure.
iii) Bicyclic Terpenoids: They contain two rings in the structure.
iv) Tricyclic Terpenoids: They contain three rings in the structure.
v) Tetracyclic Terpenoids: They contain four rings in the structure. 11
A) Mono Terpenoids:
i) Acyclic Monoterpenoids ii) Monocyclic monoterpenoid
12
A) Mono Terpenoids:
◦ iii)Bicyclic monoterpenoids: These are further divided into three classes.
13
B) Sesquiterpenoids:
14
C) Diterpenoids:
i) Acyclic diterpenoids
15
Isolation of mono and sesquiterpenoids
◦ Both mono and sesquiterpenoids have common source i.e essential oils. Their isolation is
carried out in two steps:
i) Isolation of essential oils from plant parts: The plants having essential oils generally have the
highest concentration at some particular time. Therefore better yield of essential oil plant
material have to be collected at this particular time. e.g. From jasmine at sunset. There are
four methods of extractions of oils.
a) Expression method
ii) Separation of Terpenoids from essential oil: A number of terpenoids are present in essential
oil obtained from the extraction. Definite physical and chemical methods can be used for
the separation of terpenoids. They are separated by fractional distillation. The terpenoid
hydrocarbons distill over first followed by the oxygenated derivatives. More recently different
chromatographic techniques have been used both for isolation and separation of
terpenoids.
17
General properties of Terpenoids
1. Most of the terpenoids are colourless, fragrant liquids which are lighter than water and
volatile with steam. A few of them are solids e.g. camphor. All are soluble in organic solvent
and usually insoluble in water. Most of them are optically active.
2. They are open chain or cyclic unsaturated compounds having one or more double bonds.
Consequently they undergo addition reaction with hydrogen, halogen, acids, etc. A number
of addition products have antiseptic properties.
4. They are easily oxidized nearly by all the oxidizing agents. On thermal decomposition, most
of the terpenoids yields isoprene as one of the product. 18
General Methods of structure elucidation
Terpenoids
i) Molecular formula: molecular formula is determined by usual quantitative analysis and mol.wt
determination methods and by means of mass spectrometry. If terpenoid is optically active, its specific
rotation can be measured.
ii) Nature of oxygen atom present: If oxygen is present in terpenoids its functional nature is
generally as alcohol aledhyde, ketone or carboxylic groups.
a) Presence of oxygen atom present: presence of –OH group can be determined by the formation of
acetates with acetic anhydride and benzoyate with 3,5-dinitirobenzoyl chloride.
b) Presence of >C=O group: Terpenoids containing carbonyl function form crystalline addition products
like oxime, phenyl hydrazone and bisulphite etc.
19
General Methods of structure elucidation
iii) Unsaturation:
The presence of olefinic double bond is confirmed by means of bromine, and number of double bond
determination by analysis of the bromide or by quantitative hydrogenation or by titration with
monoperpthalic acid. Presence of double bond also confirmed by means of catalytic hydrogenation
or addition of halogen acids. Number of moles of HX absorbed by one molecule is equal to number of
double bonds present.
Addition of nitrosyl chloride(NOCl) (Tilden’s reagent) and epoxide formation with peracid also gives
idea about double bonds present in terpenoid molecule.
20
General Methods of structure elucidation
iv) Dehydrogenation:
◦ On dehydrogenation with Sulphur or selenium, terpenoids converted to aromatic compounds.
Examination of these products the skelton structure and position of side chain in the original
terpenoids can be determined. For example α-terpineol on Se-dehydrogenation yields para-cymene.
v) Oxidative degradation:
o Oxidative degradation has been the parallel tool for elucidating the structure of terpenoids. Reagents
for degradative oxidation are ozone, acid, neutral or alkaline potassium permanganate, chromic
acid, sodium hypobromide, osmium tetroxide, nitric acid, lead tetra acetate and peroxy acids. Since
oxidizing agents are selective, depending on a particular group to be oxidized, the oxidizing agent is
chosen with the help of structure of degradation products. 21
General Methods of structure elucidation
vi) Relation between general formula of compound and type of compounds:
For example limonene (mol. formula. C10H16) absorbs 2 moles of hydrogen to give tetrahydro limonene
(mol. Formula C10H20) corresponding to the general formula. CnH2n. It means limonoene has
monocyclic structure.
limonene
25
Structure elucidation
◦ The molecular formula of myrcene was found to be C10H16
1. On catalytic hydrogenation it gave a saturated hydrocarbon C10H22, indicating the
presence of three double bonds and hence myrcene must be acyclic.
2. Of the three double bonds two were conjugated was revealed by the UV spectrum of
myrcene. which showed maxima at 225 nm. This was supported by the optical exaltation
exhibited by myrcene in addition to formation of an adduct with maleic anhydride by
Diels-Alder reaction.
26
Structure elucidation
◦ Myrcene on ozonolysis afforded formaldehyde, acetone and a ketoaldehyde, C5H6O3 .
◦ The ketoaldehyde on oxidation with chromic acid gave succinic acid. Based on these data
structure as shown was assigned to myrcene.
◦ Myrcene was confirmed by hydrating with sulfuric acid to form the alcohol geraniol
followed by oxidation to citral.
27
Geraniol Methyl isovalerate
IR: υmax , 3400 (OH), 1695, 1105, 1090, 1000, 830 cm-1.
1H NMR: δ 1.62, 1.68 (6H, C-7 methyls), 4.15 (2H, α allylic CH OH), 5.12
2
(1H, m, H-6), 5.45 (t, 1H, H-2).
13 CNMR: δ 58.7 (C-1), 124.5 (C-2), 137.2 (C-3), 39.7 (C-4), 26.6 (C-5).
124.9 (C-6), 131.2 (C-7), 25.5 (C-8), 17.4 (C-9), 16.0 (C-10).
. 28
Structure elucidation
◦ Its molecular formula was established as C10H18O.
◦ Catalytic hydrogenation yielded a tetrahydro derivative C10H22O indicating the presence of
two double bonds.
◦ This was further supported by the formation of a tetrabromide when treated with bromine
29
Structure elucidation
◦ Geraniol and nerol are geometrical
isomers.
◦ Both geraniol and nerol gave the same
tetrahydro derivative on catalytic
hydrogenation.
◦ Both of them underwent cyclisation to
give terpeneol by the action of sulphuric
acid and the rate of cyclisation in the
case of nerol was 9 times faster
compared to that of geraniol.
◦ Based on this Δ2 -double bond in nerol
was assigned as cis while the same
double bond in geraniol as trans.
30
Citral
◦ Chemical formula: C10H16, b.p. 77 °C. 𝜂20D 1.4898
◦ Citral is one of the major constituents of lemon grass oil.
Mixture of at least 4
geometrical isomers of
di-olefinic aldehyde
Trans-citral cis-citral
UV: λmax 236 nm.
IR: υmax , 1665, 1625. 1603, 1398. 1190, 1117 cm-1.
1H NMR: δ 1.65 (6H, d, C-7 methyls), 2.15 (3H, s, C-3 Me), 5.0 (1H, t, H-6),
123.5 (C-6). 132.3 (C-7). 25.3 (C-8), 17.4 (C-9), 17.0 (C-10).
MS: m/z 69 (100), 41, 84. 94, 109, 67. 83. 81. 31
Structure elucidation
◦ Formation of an oxime of citral indicated the presence of an oxo group in citral.
CHO CH N OH
+ NH2OH
Citral (a)
Oxim
Geranial (trans)
◦ Citral when heated with potassium hydrogen sulphate afforded the known aromatic
hydrocarbon, p-cymene, which fixed the position of methyl and isopropyl groups in citral.
32
Structure elucidation O OH
33
Structure elucidation
◦ Citral on oxidation with alkaline permanganate, yielded acetone, oxalic and levulenic acid.
CHO
i) KMnO4
ii) CrO3
+ +
Citral (a)
Geranial (trans)
34
Structure elucidation
Based on the above data and coupled with the biogenetic considerations that citral is
formed by the joining of two isoprene units in the head to tail fashion, structure of citral was
assigned tentatively.
This structure was further supported by the degradation of citral on treatment with aqueous
potassium carbonate when 6-methyl-hept-5-en-2-one and acetaldehyde were obtained.
The structure of citral was finally confirmed by its synthesis.
35
(-)-Menthol
◦ Chemical formula: C10H20O, m.p. 34 °C, b.p. 213 °C, [α]D -50°, 𝜂20D
1.4661.
◦ Menthol is the major constituent of Mentha piperita and has been
known in India, China and Japan since ancient times. It is mainly
used as flavouring agent and has a cooling effect. Medicinally it
exhibits antiseptic and anaesthetic properties. It is the ingredient in
cold balms.
IR: υmax , 3333, 1048, 1028, 994, 977, 920, 876, 845 cm-1.
1H NMR: δ 0.82 (3H, d, C-1 Me), 0.90, 0.93 (3H each, d, C-7 methyls), 3.42 (1H,m,
H-3).
13 C NMR: δ 31.7 (C-1). 45.2 (C-2), 71.5 (C-3), 50.2 (C-4), 23.3 (C-5), 34.6(C-6),
36
Structure elucidation
37
Structure elucidation
Occurrence:
◦ Limonene is one of the most widely distributed terpene, occurring in many 1
volatile oils especially in citrus oils.
◦ The d- form (+) is present orange (90%), lime, grapefruit, bitter orange,
mandarin, neroli, dill fennel.
◦ The 1 form (-) is less common, accur in peppermint, spearmint. The recemic
form dl (± ) is known as dipentine and occurs in volatile oils of lemon grass, 8
nutmeg, neroli, fennel etc. 9 10
Isolation:
o Limonene is isolated from the volatile oil either by careful fractional distillation, b.p 176°C
without decomposition, or via certain derivative (adducts) e.g., tetrabromide m.p 104°-
105°C. and the hydrocarbon may be regenerated by debromination with zinc and acetic
acid. 40
Limonene
◦ Limonene is identified by the preparation of a crystalline nitrosochloride m.p 103°-104°C., by
the reaction with nitrosyl chloride gas and the crystalline tetra bromide, m.p 104°-105°C.
◦ Autoxidation of limonene to corveol and carvone under the influence of air and moisture, is
most probably one of the principal factors in the spoilage of poorly stored oils that contain
high percentage of limonene e.g. citrus oils. This is particularly noticeable in old orange oils by
showing peculiar caraway odor.
7
1
H2O
O2
8
9 10
Uses :
• Limonene is widely employed for scenting cosmetics, soaps as well as for flavoring pharmaceuticals. 41
Bicyclic monoterpenoids
Pinene
-Pinene, b.p. 156°C. This is the most important
member of the pinane class. It occurs in both the (+)-
and (-)-forms in all turpentine oils.
OH
CH2Br
Br
+ Br2
β-Pinene
1,2-Dibromopinane
Oxidation
Since pinene easily oxidized by ozone, the air in the pine forest and the
surrounding area is very good for human health, especially the tuberculosis.
+H+
α-Pinene
Myrcene
Polyterpenoids
◦ Polymeric isoprenoid hydrocarbons ; Rubber is occurs as a colloidal suspension called latex
in a number of plants mainly in a rubber tree (Hevea brasiliensis).
◦ Rubber is a polyene, and exhibits all the expected reactions of the C=C function. Bromine,
hydrogen chloride and hydrogen all add with one molar equivalent per isoprene unit.
◦ Ozonolysis of rubber generates a mixture of levulinic acid ( CH3COCH2CH2CO2H ) and the
corresponding aldehyde.
◦ Pyrolysis of rubber produces the diene isoprene along with other products.
Levulinic acid
46
Polyterpenoids
◦ The double bonds in rubber all have a Z-configuration, which causes this macromolecule to
adopt a coiled conformation and high molecular weight (about one million).
◦ Physical properties of rubber: crude latex rubber is a soft, sticky, elastic substance.
47
Polyterpenoids
Rubber:
◦ Rubber is obtained from latex, which is an emulsion
of rubber particles in water that is obtained from
the inner bark of many types of trees which grow in
the tropics and sub-tropics.
◦ When the bark of the rubber trees is cut, latex
slowly exudes from the cut.
◦ Addition of the acetic acid coagulates the
rubber, which is then separated from the liquor
and either pressed into blocks or rolled into sheets,
and finally dried in a current of warm air, or
smoked.
50
Structure of rubber
◦ The halogens and the halogen acids readily add on the rubber, e.g.,
bromine gives an addition product of formula (C5H8Br2)n, and the hydrogen
chloride the addition product (C5H9Cl)n.
◦ Pummerer in 1922 showed that Pure rubber has been hydrogenated to the
fully saturated hydrocarbon (C5H10)n – this is known as hydrorubber – by
heating with hydrogen in the presence of platinum as catalyst.
◦ Rubber also forms an ozonide of formula.
O3 +
OHC O
O
rubber
+ +
OHC O OHC
52
Ozonolysis
◦ This observation led to the suggestion that rubber is composed of isoprene
units joined head to tail. Thus, if rubber has the following structure, the
formation of the products of ozonolysis can be explained as in the previous
scheme.
◦ Some of the laevulaldehyde is further oxidized to laevulic and succinic acids.
O
O CO2H
Laevulic acid
CHO
CO2 + HO2C
CO2H
succinic acids 53
Thank You
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