Teaching Genetics with Maize Models
Teaching Genetics with Maize Models
340-366 (2019)
DOI: 10.31742/IJGPB.79S.1.27
1,2 3
Firoz Hossain, Shripad Ramachandra Bhat , Trilochan Mohapatra and Ashok Kumar Singh*
1
ICAR-Indian Agricultural Research Institute, New Delhi 110 012; ICAR-National Institute for Plant Biotechnology,
2 3
New Delhi 110 012; XV Genetics Congress Trust, NASC Complex, New Delhi 110 012; Indian Council of
Agricultural Research, Krishi Bhavan, New Delhi 110 001
makes learning less interesting but also leaves most Before introducing genetics, students are already
school-level students confused. Since the past several taught core biology topics such as mitosis, meiosis,
years, we have been actively involved in training sexual reproduction in plants and animals. In fact,
biology school teachers in genetics and biotechnology genetics is best appreciated and easily understood
through workshops organized by the XV Genetics when it is explained using these core concepts. In our
Congress Trust. These interactions have made us experience, failure to connect key aspects of cell
aware of the key problems teachers face in teaching division and seed development with genetic principles
genetics at the entry level, and prompted us to develop is at the heart of much confusion and misunders-
of novel genetic stocks of maize tailor-made for tanding. Mastering Mendelian genetics requires clear
teaching genetic principles to school children. In order understanding of several terms such as ‘cross/self
to bring science lab to classroom, we have developed pollination’, ‘hybridization’, ‘dominance’, ‘recessive’,
‘model genetic resources’ which can be used to ‘gene’, ‘allele’, ‘genotype’, ‘phenotype’, ‘filial
demonstrate more than twenty key aspects/concepts generations’, etc. Further, knowledge of statistical
of genetics. These resources are relevant to school concepts of probability and sampling variation is
as well as college level students. indispensable to comprehend basic laws of inheritance
enunciated by Gregor Johann Mendel (Mendel 1866).
Maize as a model system Therefore, we feel that while introducing these terms,
features of maize especially with respect to its flower
Among various model organisms available, maize and seed development should also be explained.
possesses several unique features for demonstrating
genetic principles. These include i) a wide range of Explanation of key terms
clearly visible mutants for various traits, particularly ‘Self’- and ‘cross-pollination’ (hybridization) are two key
grain traits, are readily available (Neuffer et al. 1997); words in genetics. Pollination is the process of transfer
ii) male and female flowers are borne on separate of pollen grains from anthers to stigma, and is
structures and facilitate crosses; iii) grains on a single facilitated by wind, water, insects, birds etc. Mendel
cob show genetic segregation and represent a described his principles of inheritance using garden
population of individuals; iv) segregating seeds pea which bears hermaphrodite flowers. Textbooks
arranged in rows on a cob can be used to illustrate depicting pea as an example usually show self-
statistical concepts such as random events, sampling pollination as pollination of a flower by its own pollen,
and probability; v) ears can be easily preserved for while cross-pollination as pollination by pollen from
years and readily carried anywhere; vi) the mutants another plant. In contrast to garden pea, maize is a
are well characterized with respect to chromosomal monoecious plant where female inflorescence (called
locations of genes and molecular details of their ear) is borne in the axil, whereas male flowers are
action(s) are well worked out; and vii) people are very borne terminally on an inflorescence called tassel.
familiar with different types of corn (sweet corn, baby Hence, pollen from the tassel needs to disperse and
corn, pop corn, field corn etc.) and explaining their land on silk (fused style and stigma) to effect
differences in terms of genetics, helps to connect fertilization of female flowers. Many students
classroom teaching with day-to-day life experiences. introduced to genetics using pea as the example find
Besides, genetic studies with maize have led to path it difficult to explain cross- and self-pollination when
breaking discoveries such as heterosis (Shull 1948, presented with cases of monoecious or dioecious
1952) and transposable elements (jumping genes) plants. Maize offers good opportunity to clarify that
(McClintock 1951). Efforts have been made in the past self-pollination is not limited to pollination of a flower
to use maize as a model for teaching some concepts by its own pollen but includes all types of matings
of genetics (Chinnici 1999, Ford 2000). Here, we have involving the same or genetically identical individuals,
attempted to expand on those to include additional whereas cross pollination is the mating between
aspects, particularly, concerning statistical aspects. genetically dissimilar (contrasting) individuals. After
We describe below various mutant stocks gathered the students understand this, they will be able to
and assembled by the Maize Genetics Unit, Division explain various types of pollination in dioecious plants
of Genetics, ICAR-Indian Agricultural Research as well.
Institute (IARI), New Delhi and how they could be used
to explain different key concepts of genetics to The terms that should be introduced next are
students. ‘traits/characters’ and ‘character states/forms’ or
342 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
‘phenotypes’. In maize, a large number of mutants and parental derivation. This is particularly important
with contrasting seed features including variations in as maize seeds borne on cobs will be used here to
colour, texture, shape, appearance etc. are available, demonstrate various Mendelian concepts.
which can be very effectively used to explain the
above terms. A complete list of traits and character Maize seed displays typical monocot features.
states investigated by Mendel in pea and available in To understand it fully, one should start from the ovule.
our maize genetic stocks developed for teaching are A specialised cell within the ovule called the
presented in Table 1 and 2, respectively. Further, using ‘megaspore mother cell’ (2n) undergoes meiotic division
examples of mutants in starch biosynthesis, one can to generate four ‘megaspores’ (n) arranged in a linear
also show that phenotype is not restricted to traits fashion (Fig. 1). Of these, the lower three cells (i.e.
that can be seen but also extends to those that could closer to micropyle) degenerate leaving only one
be felt/experienced with other senses like taste. The functional megaspore. This functional megaspore (n)
other term is ‘genotype’. Mendel used the term ‘factor’ undergoes three successive mitotic divisions without
to refer to what we now call gene that determines a cytokinesis to yield an eight-nucleate cell with four
trait. For instance, the factor that makes a plant tall is nuclei each at opposite poles. One nucleus from each
denoted as ‘T’, while its alternate character state, dwarf pole migrates to the centre after which cellularization
is denoted as ‘t’. Mendel used ‘pure breeding’ takes place giving rise to seven-celled embryo sac
(homozygous) lines for hybridization experiments called the megagametophyte. The megagametophyte
which he obtained after repeated cycles of self- has three haploid cells called ‘antipodals’ located at
pollination. The ‘pure breeding’ lines are those whose the chalazal end, while another three haploid cells are
selfed progenies do not show variation for the trait(s) located at the micropylar end. The middle cell of the
under consideration. micropylar triplets is called the ‘egg cell’ while the cells
on its either side are called ‘synergids’. The two nuclei
Before initiating discussion on Mendel’s laws, that migrated to the centre are enclosed in one cell
we feel that a quick recapitulation of angiosperm seed called the ‘central cell’ (polar nuclei) (2n). On the male
development is imperative. As seed comprises of cells side, pollen mother cell (2n) undergoes one meiotic
that are structurally, genetically and compositionally division giving rise to four microspores (n) arranged in
different and unique, while explaining the seed, a tetrad fashion (Fig. 2). These microspores develop
emphasis should be placed on specifying the lineage into pollen grains. During pollen maturation, microspore
and identity of different cell types including their ploidy undergoes one mitotic division to generate two cells
Table 2. Details of nuclear genes that show phenotype in seed and/or cob
appearance
2. Endosperm Bt2 Round (low sugar) bt2 Highly crumpled Endosperm (3n) Small subunit of ADP-Glucose 4
appearance (high sugar) pyrophosphorylase
3. Endosperm Sh1 Round sh1 Crumpled Endosperm (3n) Sucrose synthase 9
appearance (small dent)
4. Endosperm Sh2 Round (low sugar) sh2 Highly crumpled Endosperm (3n) Large subunit of ADP-Glucose 3
appearance (high sugar) pyrophosphorylase
5. Endosperm Su1 Round (low sugar) su1 Partially crumpled Endosperm (3n) Debranching enzyme (DBE) 4
appearance (high sugar)
6. Endosperm Wx1 Normal/glossy wx1 Pale Endosperm (3n) Granule bound starch synthase (GBSS) 9
appearance
7. Endosperm O2 Normal/glossy o2 Opaque Endosperm (3n) Leucine zip (bZIP) transcription factor of 7
hardness genes coding zein proteins
8. Endosperm Bz1 Purple/red bz1 Bronze Endosperm (3n) & Flavonol 3-o-glucosyltransferase 9
colour depending on Pr1 embryo (2n)
or pr1
9. Endosperm C1 Purple/red depen- c1 Colourless Endosperm (3n) & Transcription factor of genes involved in
colour ding on Pr1 or pr1 embryo (2n) anthocyanin synthesis 9
C1-I Colourless C1 Purple/red depending
on Pr1 or pr1
10. Endosperm Pr1 Purple pr1 Red Endosperm (3n) & Flavonoid 3’-hydroxylase 5
colour embryo (2n)
11. Endosperm R1-nj Purple/red crown r1 Colourless Endosperm (3n) & Transcription factor of genes involved 10
colour colour depending embryo (2n) in anthocyanin synthesis
on Pr1 or pr1
Maize: A model organism for teaching genetics
Law of segregation
Fig. 7. Seed shape obtained by selfing or intermating Fig. 9. Segregation of round and sugary in F2 seeds
of parents borne on F1 cob
coming together of alleles Su1/su1 in the F1 does not 3:1 segregation in F2 seeds available in our stocks
lead to their mix-up, and the two alleles separate to include (i) purple: white, (ii) round: shrunken, (iii) normal:
give rise to Su1 and su1 gametes each retaining its waxy, and (iv) normal: high amylose (Fig. 10). Both
unique characteristics. When such gametes unite at
random they will give rise to seeds with three kinds of
genotypes, namely, Su1/Su1, Su1/su1 and su1/su1.
Thus, the hybrid which shows the dominant phenotype
gives rise to selfed progenies that segregate for the
trait in 3 (dominant): 1 (recessive) ratio. For instance,
mutation of the Su1 gene makes the maize seed sweet
and such grains are crumpled at maturity (as against
the round normal seed). This 3 (round): 1 (sugary)
segregation of grains can be clearly seen on a cob
obtained by selfing an F1 plant (Fig. 8). For instance,
in the ear shown in Fig. 9, out of a total 425 grains,
322 are round and 103 are sugary. Other examples of
Fig. 10. Seed trait segregation in F2 seeds borne on F1
cob
endosperm colour (yellow versus white) and grain normal inbred (Sh2Sh2) and shrunken (sh2sh2) when
appearance (glossy versus waxy), considered singly crossed with the recessive parent (sh2sh2), the seeds
shows 3:1 segregation (Fig. 12). These results on an on F1 cob showed 176 (round): 168 (shrunken) (i.e.
ear beautifully demonstrate that Y1 and Wx1 genes BC1F1 generation) thereby exhibiting 1:1 segregation
segregate independent of each other. (Fig. 14). While the F1 crossed with dominant parent
(Sh2Sh2) had all round grains.
Testcross
Maternal effect
Testcross is the cross between F1 and its parent that
carries the recessive allele. Thus, it is in essence a In maternal effect, the phenotype of the progeny is
348 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
Fig. 17. Inheritance of pericarp colour in maize in direct and reciprocal crosses
metabolites are present in cotyledons which are the classified plants into contrasting categories such as
products of fertilization. Therefore, maternal tissue of tall and dwarf, and counted the number of individuals
the seed cannot be used to explain maternal effect. of the two categories in segregating generations. He
In Brassica, glucosinolates are synthesized in leaves did not resort to measuring height of individual plants
and silique wall, and are transported to seeds as practised by his contemporaries working to unravel
(cotyledons). Hence, all seeds on a plant irrespective the mystery of inheritance. This mathematical
of their genotype show glucosinolate content and treatment allowed Mendel to work out the proportion
profile corresponding to their mother. In the case of of the two categories and thereby arrive at the laws of
fatty acids, however, synthesis takes place in the inheritance. Size of the population is an important
cotyledons but the photosynthates necessary for fatty factor for drawing conclusion as small populations
acid synthesis are supplied from the mother plant which could show highly distorted ratios.
allocates equal amount to all its progenies. It is to be
noted that total fatty acid content shows maternal Toss of a coin or roll of dice is commonly used
effect but not the fatty acid profile (i.e. types of fatty to demonstrate randomness of occurrence of events
acids) which shows segregation among seeds on a and the concept of probability in genetics teaching
plant. The practical implication of maternal effect is (Lesnik 2018). Maize ear serves as an excellent model
that genotyping and phenotyping need to be done, to illustrate random occurrence of segregation and the
respectively, in successive generations. Thus, effect of population size on segregation ratio. Maize
maternal effect is of great practical significance and ear generally possesses 12-14 rows and each row has
calls for careful analysis and explanation to avoid 30-40 grains. When students are presented with an
confusion (see cytoplasmic inheritance later). ear segregating for say, normal and sugary seeds,
they will be able see the random distribution of two
Random events, sample size and segregation ratio types of seeds along a row and find that no two rows
show identical pattern of distribution of normal and
Mendel’s success in cracking the basis of inheritance sugary seeds. Also, when the students are asked to
of traits is often attributed to his mathematical calculate segregation ratios row wise, and on whole
approach (Zhang et al. 2017). In other words, Mendel cob basis, they will be able to realise the effect of
350 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
sample size on ratio. An example of segregation of (Morgan 1911). A pair of genes/traits are said to be
normal versus sugary grains is presented in Table 2 completely linked if the F 2 progenies show only
and Fig. 18. The random distribution of normal and parental types (trait combinations present in the
parents). However, if the linkage is incomplete, F 2
progenies will show a large fraction of parental types
and a small fraction of recombinant phenotypes (trait
combinations not present in the parents). It is now
established that the proportion of recombinants
depends on the distance between the two genes. The
discovery of linkage has led to the demonstration that
genes are linearly arranged on chromosomes and
thereby led to chromosomal basis of heredity.
Pleiotropy
Multiple alleles
Penetrance
phenotype. If all individuals carrying a given allele show ‘variable expressivity’. For instance, all maize seeds
the expected phenotype, it is complete penetrance. possessing the recessive o2 allele show opaque
Various seed phenotypes discussed earlier such as phenotype (complete penetrance) (Vasal et al. 1980,
waxy, sugary, shrunken, opaque are examples of Gupta et al. 2013). However, the degree of opaqueness
complete penetrance. Incomplete penetrance could is variable among grains on an ear segregating for the
result from environmental effects or the presence of trait (Fig. 24) which is clearly visible when grains are
other interacting genes elsewhere in the genome. In
such case, only a fraction of individuals carrying the
allele show the corresponding phenotype. In maize,
pollen expressed Matrilineal (MATL) gene located on
chromosome 1 mediates fertilization of male gamete
with the egg cell (Kelliher et al. 2017). When maize
plant carrying normal MATL allele is crossed with pollen
from matl matl plants, fertilization takes place but the
chromosomes from the male parent fail to propagate
during zygotic divisions leading to production of
maternal haploid embryos. However, an inbred
homozygous for matl/matl upon crossing produces
haploids in only 8-10% of the seeds (~10%
penetrance). Besides haploids, mat1 mutation causes Fig. 24. Variable expressivity for kernel opaqueness
embryo abortion in a few developing seeds in selfed conditioned by recessive o2 allele. A: ear of
ears of matl/matl plants (Fig. 23) as against well-filled normal maize, B: ear of QPM, C: variable
degree of opaqueness in seeds of an ear of
grains found when the dominant allele (MATL) is
QPM inbred, D: variation of softness in QPM
present. seeds (F ) (orange and yellow regions depict
hardness and softness, respectively), E: F 2
seeds viewed under light box , black indicates
soft region, translucent represents hardness
Fig. 25. Dosage effect of R1-nj allele (in F seeds borne Fig. 26. Activity of transposable elements (TEs)
on F1 cob) conditioning purple pigmentation in affecting pericarp (A) and endosperm (B-D)
crown regions of endosperm pigmentation
(Chaikam et al. 2015). The recessive r1 allele fails to colour of the endosperm is interrupted, it does not
produce purple colour in the crown region of produce any colour. The excision of TE restores the
endosperm. Selfing of a heterozygous plant (R1-nj/r1) function of C1 leading to the formation of purple
yields four types of seeds, namely, deep purple, light pigment patches (Fig. 26B-D). However, depending
purple, fade purple and no pigment with corresponding upon the time of excision of TE from the C1 gene,
endosperm genotypes of R1-nj/R1-nj/R1-nj, R1-nj/R1- different sizes of deep purple pigmented patches are
nj/r1, R1-nj/r1/r1 and r1/r1/r1 (Fig. 25). Therefore, R1- observed. Early excision leads to large coloured spot,
nj allele displays dosage effect with increasing number while late excision leads to smaller spots. Thus, a
of dominant alleles giving more intense pigmentation. complex concept of jumping gene in action could be
Similarly, Y1 gene producing yellow/orange endosperm easily demonstrated with our maize stocks.
colour also shows dosage effect (Fig. 12). Endosperm
with Y1/Y1/Y1 is deep yellow/orange, Y1/Y1/y1 is light Xenia
yellow/orange, Y1/y1/y1 is fade yellow/orange, while If a seed trait (e.g. colour, size, shape etc.) is
y1/y1/y1 is white with no synthesis of carotenoids. influenced by the pollen carrying the dominant allele,
Transposable elements (Jumping gene) it is called xenia. For instance, when a sh2/sh2 maize
plant (recessive homozygous) receives Sh2 (dominant
The position of a gene on a chromosome is fixed and allele) pollen, the resulting seed will have Sh2/sh2/
it is known as ‘locus’. Working with maize, McClintock sh2 endosperm constitution and will form round instead
(1951) reported unusual behaviour of genes controlling of shrunken seeds (sh2/sh2/sh2 endosperm) expected
seed colour which appeared to switch on and off within from self pollination (Fig. 27). Thus, a few round grains
a seed giving various seed colour patterns. Detailed
examination led to the discovery of Transposable
Elements (TEs) as the cause of this behaviour. These
TEs are capable of moving from one place to other on
the same or different chromosomes. When a TE moves
and inserts into a gene, it may disrupt the function of
that gene, while its excision restores gene function.
Maize genome possesses several highly active TEs
such as Ac-Ds MuDR-DMu, Spm-dSpm (En-I) and
Dt1-dt1, which impart unusual colour pattern to grains.
For example, P1-rw gene imparts red colouration to
the pericarp but when it is interrupted by a TE, it does
not produce red coloured pericarp (Fig. 26A). However,
when TE moves out of the P1-vv gene, it restores its
function and starts producing the red colour in stripes. Fig. 27. Xenia effects of foreign pollens bearing
Similarly, when C1 gene responsible for deep purple dominant allele on different seed traits
April, 2019] Maize: A model organism for teaching genetics 355
among other shrunken grains indicate contamination by F1 plant and not in F1 seeds produced on the parent.
displaying xenia effect. Similar effect is also found Heterosis can be measured in three ways. When the
when Y1 pollen fertilizes y1/y1 plant (Y1/y1/y1: yellow, performance of F1 is compared with its mid-parent
y1/y1/y1: white), O2 fertilizes o2o2 plant (O2/o2/o2: value (average of the two parents), it is called ‘average
Glossy, o2/o2/o2: dull/opaque) (Hossain et al. 2008b) heterosis’, while comparison of F1 with the better of
and C1 fertilizes c1c1 plant (C1/c1/c1: purple, c1/c1/ the two parents, it is called ‘heterobeltiosis’. When
c1: colourless endosperm). It is of historical interest the performance of F1 is judged against commercial
to note that de Vries and Correns independently variety/hybrid, it is called as ‘economic heterosis’.
noticed xenia effect working with maize seed traits Maize lines show rapid decline in performance for
starchy/sugary and coloured/colourless endosperm almost all traits over successive generations of selfing.
(Rhoades 1984). One may note that xenia and maternal This phenomenon is called ‘inbreeding depression’.
effects are contrasting features. Traits showing Hybrid breeding involves developing true breeding
maternal effect are not affected by xenia and vice inbred lines (homozygous) and then identifying the best
versa. Such xenia effect is of practical significance combination of inbreds that gives highly heterotic
especially in cross pollinated crops where stray pollen hybrid. ‘Pusa Vivek QPM-9 Improved’ is a single cross
from open pollination could affect nutritional quality hybrid developed by IARI, New Delhi. The parents are
traits conditioned by recessive alleles. Recessive o2 PMI-PV-1 and PMI-PV-2. The average weight of a
gene based quality protein maize (QPM) hybrid is an single ear of the hybrid is 220 g, while the ears of
example. As discussed earlier, in mustard, parents are 60 g and 80 g, respectively (Fig. 28) and
glucosinolate content and profile are maternally the comparable commercial hybrid (Vivek Maize
controlled and are not affected by open pollination. Hybrid-27) gives ears with mean weight of 200 g. Thus,
However, fatty acid profile (but not fatty acid content) the three types of hererosis can be calculated as below.
of seeds shows xenia effect. Performance of F1-mean
Heterosis and inbreeding depression performance of parents
Average heterosis = x 100%
Heterosis is defined as the superior performance of Mean performance of parents
F1 over its parents/check variety. The concept of
heterosis was first proposed by East and Shull based 220 (60 80) / 2
= x 100%
on their studies with inbreeding of maize (Rhoades (60 80) / 2
1984). Heterosis is now widely exploited to obtain higher
yields in crops through breeding of hybrid cultivars, = 214%
and forms the foundation of hybrid seed industry. Performance of F1-
Heterosis can be vividly demonstrated in a classroom performance of better parent
by presenting maize ears produced on parental inbred Heterobeltosis = x 100%
lines and their hybrids (Fig. 28). It is important to Performance of better parent
emphasize that heterosis is realized on ear produced
220 80
= x 100%
80
= 175%
Performance of F1-
performance of commercial
hybrid
Economic heterosis = x 100%
220 200
= x 100%
200
Fig. 28. Ears of parents and their hybrid depicting
heterosis for ear length, seed number and ear = 10%
weight
356 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
Unlike Mendel’s traits where specific phenotypes deep purple, light purple, fade purple and no pigment
are associated with one or a few genes, yield heterosis have diploid genotypic (in embryo) constitution as R1-
is governed by many genes. Although each of these nj/R1-nj, R1-nj/r1, r1/R1-nj and r1/r1, respectively. Using
genes follow Mendel’s laws of inheritance, discrete ears of different generations produced through open
classes are not observed because each gene makes pollination among different mixtures of individuals
a small contribution towards phenotypic expression segregating for R1-nj and/or Y1 genes one can
of one or more traits which ultimately lead to heterosis. demonstrate Hardy-Weinberg principle to students. For
Further, environmental factors also influence trait example, consider a sample of 430 grains drawn from
expression thereby confound the detection of individual the harvest of a large random mating population have
contribution of genes towards a trait. four genotypic classes as 135 R1-nj/R1-nj, 120 R1-nj/
r1, 155 r1/R1-nj and 20 r1/r1. Since, R1-nj/r1 and r1/
Hardy-Weinberg Law R1-nj represent heterozygote, the frequency of
Hardy and Weinberg independently proposed a law heterozygote class is (120+155)/430 = 0.64. Similarly,
pertaining to frequency of occurrence of alleles and the frequency of homozygotes R1-nj/R1-nj and r1/r1
genotypes over generations in a population that is 135/430 = 0.31 and 20/430 = 0.05, respectively.
reproduces through random mating among individuals. Thus the gene/allele frequency of R1-nj = 0.31 + (0.64/
The law states that allele and genotype frequency will 2) = 0.63, and r1 = 0.05 + (0.64/2) = 0.37. Now, we
remain constant over generations in a large random can calculate the genotype frequency of the next
2
mating population in the absence of disruptive forces generation as R1-nj/R1-nj = (0.63) = 0.40, R1-nj/r1 =
2
such as mutation, migration, selection and random 2×0.63×0.37 = 0.47, r1/r1 = (0.37) = 0.13. It shows
drift (Hardy 1908, Weinberg 1908). Allele frequency is that either the the initial population was not in
also referred to as ‘gene frequency’ and ‘gametic’ equilibrium or the sample does not truely represent
frequency. Random mating means that an individual the population. In any case, after one generation of
in a population has an equal opportunity of mating random mating of individuals of this sample, the gene/
with any other individual of the same population. This allele frequency will be (R1-nj = 0.63, and r1 = 0.37)
law is central to all population genetics and is usually and genotype frequency will be (R1-nj/R1-nj = 0.40,
explained using algebraic equations. To calculate allele R1-nj/r1 = 0.47 and r1/r1 = 0.13) and this will remain
and genotype frequencies, one has to determine the so in subsequent generations if they are maintained
genotype of individuals. As explained earlier, by random mating, and other disruptive forces are not
dominance obscures identification of homozygous and operating.
heterozygous individuals expressing the dominant Hardy and Weinberg equilibrium can also be
phenotype. Using a conventional testcross to effectively applied in case of traits where dominant
determine zygosity status is quite demanding and homozygotes and heterozygotes cannot be
hence the operation of this law in nature is rarely distinguished based on phenotype. In a sweet corn
demonstrated. These days molecular markers could composite (population), it was found that out of
be used for this purpose but in this article we confine randomly selected 500 grains, round and shrunken
to features that can be used in classroom without using grains were 50 and 450, respectively. We now know,
sophisticated techniques. Again, maize ears offer a that sh2sh2sh2 endosperm gives shrunken phenotype,
chance. while Sh2Sh2sh2, Sh2sh2sh2 and Sh2Sh2Sh2
In previous pages, we explained how gene condition gives round phenotype. These four
dosage effect influences several endosperm colour endosperm classes correspond to sh2sh2, Sh2sh2,
traits. For instance, each of the endosperm phenotypes sh2Sh2 and Sh2Sh2 embryo (diploid) genotypes. Thus
such as deep purple, light purple, fade purple and no frequency of recessive sh2sh2 is = 450/500 = 0.90.
pigment conditioned by R1-nj gene could be The frequency of Sh2– is = 1-0.90 = 0.10. The
unambiguously assigned to respective genotypes (Fig. frequency of sh2 allele = 0.95 (square root of 0.90).
25). Note that based on endosperm genotype one could Hence, the frequency of dominant Sh2 = 1-0.95 = 0.05.
also clearly specify the male and female gamete. For This calculation has practical significance, as sweet
instance, heterozygous endosperm genotype R1-nj/ corn population should always have recessive sh2,
R1-nj/r1 results from the union of R1-nj female with r1 any contamination by dominant Sh2 allele in the
pollen while R1-nj/r1/r1 occurs from the fertilization r1 population will reduce the grain quality as Sh2 carrying
female with R1-nj pollen. Thus, the four types of grains grains will not be sweet. Since maize is a cross
April, 2019] Maize: A model organism for teaching genetics 357
pollinated crop, foreign pollen from neighbouring field reactions is converted to amylose and amylopectin,
can always contaminate and deteriorate the quality. the components of storage starch. Maize grains
The present example suggests that though frequency normally possess 30% amylose and 70% amylopectin.
of dominant Sh2 is quite low, selection should be Grains desiccate during maturity and take the round
practised to remove the round grains during selection shape due to packaging of starch and protein.
of ears for raising the next generation of sweet corn However, the mutant sh2 allele impairs conversion of
population. UDP-glucose to ADP-glucose, leading to less
synthesis of starch. Thus sh2 grains have less dry
Connecting phenotype and genotype matter while the sink size (grain volume) remains same
The classical Mendelian genetics did not provide a as the normal Sh2 grain. As a result, at maturity such
clear link between genotype and phenotype. However, grains collapse or shrivel as they lose water. These
molecular biology studies of gene action have provided grains with mutant sh2 allele possess high sugar and
us with a complete picture of information flow from are harvested at 20 days after pollination to be sold
gene to phenotype for several traits. The central as sweet corn. Another such example is the su1 gene
dogma of molecular biology where information flows located on chromosome 4. The dominant Su1 codes
from DNA to RNA to protein in a linear fashion (Crick for starch debranching enzyme and is responsible for
1970) holds good in most cases although some synthesis of amylopectin (Fig. 29). The mutant su1
exceptions have been well recognised. Most often, it allele affects this conversion step, leading to less
is the protein that a gene codes for determines the starch synthesis. However, the effect is less severe
phenotype. In maize, various examples clearly depict than that seen with sh2 allele. Hence, su1 mutant grains
such flow of information. The Sh2 gene located on appear as partially shrivelled at maturity. When both
chromosome 3 codes for the large subunit of ADP- the genes are in recessive condition (i.e. sh2sh2/
glucose pyrophosphorylase enzyme that catalyzes su1su1) the grains show extreme crumpling (Mehta et
the conversion of UDP-glucose to ADP-glucose (Fig. al. 2017c). The Wx1 gene located on chromosome 9
29). ADP-glucose by a further series of biochemical encodes granule bound starch synthase enzyme
Fig. 29. Role of Sh2 and Su1 genes in starch biosynthesis (as per Whitt et al. 2002) and their effects on seed
phenotype
358 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
Fig. 30. Role of Wx1 and Ae1 genes in starch biosynthesis (as per Whitt et al. 2002) and their effects on seed
phenotype
responsible for the synthesis of amylose (Fig. 30). gene that masks the effect of the other gene is called
The recessive wx1 allele almost completely blocks ‘epistatic’ while the gene that is masked is referred to
this step, leading to accumulation of 95-100% as ‘hypostatic’. Considering that a gene regulates just
amylopectin. The grains with high amylopectin look one step in a series of reactions of a long biochemical
pale and can be easily identified from the normal glossy pathway leading to the manifestation of a trait, it is
grains. Further, the recessive amylose extender1 (ae1) easy to visualise occurrence of epistasis among genes
enhances the amylose level from 30% in normal grains regulating a metabolic pathway. The first hint of
to a higher level (50-70%, average: 60%) (Stinard et epistasis is that a known gene fails to show expected
al. 1993). The grains of ae1ae1 can be easily identified segregation in a new genetic background. At least six
by their pale look in comparison to glossy appearance different kinds of epistatic interactions involving two
in the normal maize. These examples demonstrate genes are commonly recognised which give distinct
how information flows from gene to phenotype. The F2 segregation ratios (Table 3).
molecular function and phenotype of various other
genes have been mentioned in Table 2. Epistasis is best illustrated with grain colour
variations in maize. Apart from pericarp colour
Epistasis
(maternal tissue), maize grain colour is determined by
Epistasis is intergenic interaction involving two or more anthocyanins and carotenoids accumulating in the
genes where one gene masks the effect of the other endosperm (Ford 2000). Biosynthesis pathways for
gene(s). This is akin to dominance/recessive anthocyanins (Sharma et al. 2011) and carotenoids
relationship between alleles of a gene (intragenic) giving (Naqvi et al. 2011) are well characterized. Maize
different character states that we have discussed endosperm could be bronze, red, purple, depending
above; in this case, however, the phenotypic change on the type of anthocyanins that accumulate there, or
occurs due to interaction between different genes. The colourless when no anthocyanins accumulate. In the
April, 2019] Maize: A model organism for teaching genetics 359
absence of anthocyanins, the carotenoid pigments in presented in Fig. 31 to facilitate illustration of various
the endosperm becomes visible and hence the grains epistastic interactions. Pr1 codes for flavonoid 3-
could be yellow or white depending on whether or not hydroxylase and drives the pathway downward to
it accumulates carotenoid pigments (Zunjare et al. produce purple pigment, cyanidin (Sharma et al. 2011).
2017, Goswami et al. 2018). Thus, when pericarp is When Pr1 function is lost (i.e. pr1 allele), endosperm
colourless, grains could be bronze, red, purple, yellow appears red due to the accumulation of pelargonidin
or white. pigment. The other important genes of the pathway,
namely A1, A2, Bz1 and Bz2 also code for key
Anthocyanin biosynthesis in grains involves enzymes of the pathway (structural genes). Genes
several steps and at least seven genes are well C1 and Red1 (R1) code for transcription factors and
characterized in maize. Simplified pathways are are essential for expression of A1 gene and other genes
Fig. 31. Biosynthesis pathways of A: anthocyanin (as per Sharma et al. 2011), B: carotenoid (as per Naqvi et al.
2011) in maize
360 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
in the pathway. Loss of function in any of the genes in Duplicate dominant genes
the anthocyanin pathway arrests the pathway giving
colourless endosperm. Y1 gene which functions in the When a gene is duplicated, loss of function of one
endosperm codes for phytoene synthase and is gene will be compensated by the other. In maize,
responsible for yellow colour of the endosperm and its Orange pericarp1 (Orp1) and Orp2 are duplicate genes
loss-of-function gives white endosperm. present on chromosome 4 and 10, respectively.
Tryptophan synthase is composed of - and -
To understand various epistatic interactions, we subunits, while both Orp1 and Orp2 code for -subunit
have to consider joint segregation of a pair of these (Wright et al. 1992, Fig. 32). The double recessive
genes (i.e. dihybrid ratio) when the rest of the genes
of the pathway are homozygous for the dominant allele
(and carry the recessive allele p1-ww for pericarp
colour). Note that these genes are not linked and
segregate independently.
Dominant epistasis
exhibit round phenotype, their recessive allele gives In plants, the majority of imprinted genes are
crumpled phenotype. In F2 grains, 9 round (Sh2-/ expressed during early stages of seed development,
Bt2-): 6 crumpled (3 sh2sh2/Bt2- + 3 Sh2-/bt2bt2): 1 particularly in the endosperm. Depending on the
extremely crumpled (sh2sh2/bt2bt2) are observed. The parental origin of the functional allele, imprinting is
crumpling of grains caused by sh2sh2 and bt2bt2 are classified as ‘maternal’ or ‘paternal’. In maize,
phenotypically similar, but the double recessive imprinting was first reported by Kermicle (1970) for R1
(sh2sh2/bt2bt2) is highly crumpled and can be allele responsible for red coloured endosperm. When
distinguished from crumpling caused by either sh2 or R1 allele is inherited from the female parent, the
bt2. endosperm (R1/R1/R1 or R1/R1/r1) will be uniformly
red. However, if the R1 allele is received from the
Inhibitory epistasis male parent, the endosperm (r1/r1/R1) will be mottled
We have previously discussed multiple alleles. The with irregular patches of red. It is pertinent to state
C1 locus has a third allele designated as C1-I (C1- that only specific alleles of R show imprinting. It is
Inhibitor) with the dominance relations as C1-I dominant now known that such epigenetic changes result from
over C1, while both being dominant over c1. C1-I parent-specific acetylation/methylation of chromatin
inhibits the C1 allele. Now consider an F1 hybrid with bound histones or DNA leading to suppression of
C1-IC1/R1r1. This F1 will show yellow grain colour as transcription (Gehring and Satyaki 2017).
the action of C1 allele is inhibited in the presence of Paramutation and epialleles
C1-I allele. Upon selfing, this hybrid will show 13 yellow
[9 C1-I-/R1- + 3 C1-I-/r1r1+1 C1C1/r1r1]: 3 purple As per Mendel’s first law, alleles in a hybrid do not
[C1C1/R1-] segregation in the genetic background of affect each other and are passed on to the next
Y1 allele. This is also called dominant and recessive generation retaining their characteristic features.
gene interaction. Exception to this rule was first reported by Brink (1956)
in maize, where some alleles of the R1 gene when
Epistasis with three genes brought together with a functional R1 allele were found
to induce heritable suppression of the functional allele.
When dominant alleles of two genes give rise to a
This phenomenon is called ‘paramutation’; the allele
new phenotype, it is called complementary epistasis.
responsible for alteration of expression is called
Note that epistasis may involve more than two genes.
‘paramutagenic’ (designated as R1) while the allele
Complementary epistasis in maize grains can be
that is altered is called ‘paramutable allele’. In fact,
demonstrated with the F1 trihybrid Pr1pr1/C1c1/Y1y1.
once altered, the paramutable allele itself becomes
This F1 will show purple grains due to the presence of
paramutagenic and is designated as R1* to distinguish
Pr1 and C1 alleles. In the F2, four types of grain colours
it from R1. An important feature of this phenomenon
namely, purple, red, yellow and white will be found in
is that the two alleles do not show any change in the
the ratio of 36: 12: 12: 4 (or 9: 3: 3: 1). Note that the
nucleotide sequence of the gene. It is to be noted that
trihybrid will produce 27 Pr1-/C1-/Y1- (purple), 9 Pr1-/
most R1 alleles are neither paramutagenic nor
C1-/y1y1 (purple), 9 Pr1-/c1c1/Y1- (yellow), 9 pr1pr1/
paramutable (i.e. neutral alleles). Thus, when such
C1-/Y1- (red), 3 Pr1-/c1c1/y1y1 (white), 3 pr1pr1/C1-/
paramutable and paramutagenic alleles are brought
y1y1 (red), 3 pr1pr1/c1c1/Y1- (yellow) and 1 pr1pr1/
together in a hybrid, grains become colourless or lightly
c1c1/y1y1 (white) classes.
coloured as anthocyanin synthesis will be attenuated.
Genetic imprinting Further, F2 grains do not show any segregation. The
P1-rr gene that we discussed earlier (Fig. 22) also has
For most genes, parent-of-origin of an allele does not paramutagenic alleles P1-rr. Paramutation has been
affect its expression i.e., an allele behaves identically described for total five genes in maize, namely, R1,
irrespective of whether it is inherited from the male or P1, B1, Pl1 and lpa1-241 (Arteaga-Vazquez and
the female parent. For example, we have seen that Chandler 2010) of which, all except lpa1-241 code for
both (Su1/Su1 × su1/su1) and (su1/su1 × Su1/Su1) transcription factors that regulate genes governing
crosses give normal F1 (Su1/su1) grains (dominant biosynthesis of purple and red pigments in different
phenotype) indicating that Su1 allele coming from either parts of maize plant. Molecular studies of paramutation
of the parents is equally effective. However, for some have revealed that the altered allelic expression pattern
genes, the expression of an allele is determined by its (suppression) is brought about by changes in cytosine
parent-of-origin. Such genes are said to be imprinted. methylation of DNA by RNAi-mediated gene silencing
362 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
Cytoplasmic inheritance (S: USDA) (Allen et al. 2007). The chimeric sequence
Turf13 results in CMS-T, while chimeric sequence of
Soon after the rediscovery of Mendel’s laws in the
three genes, viz., atp6, atp9 and cox-III are found in
beginning of the twentieth century, case of uniparental
CMS-C. Similarly, ORF355 and ORF77 chimeric
(maternal) inheritance was reported. It is now well
sequences are associated with CMS-S system (Table
established that genetic material is present not only
4). When a male sterile parent is crossed with fertile
in the nucleus but also in cytoplasmic organelles,
parent, the F1 carries CMS cytoplasm contributed by
plastids and mitochondria. Mendel’s laws operate for
the female parent, and therefore fails to produce pollens
the nuclear genes, while mostly uniparental inheritance
is observed for cytoplasmic genes. Unlike nuclear
Table 4. Details of maize cytoplasm types causing
genes which occur in two copies per cell (diploid), maternally inherited male sterility
organelle genes occur in multiple copies (100-1000/
cell). In most angiosperms, pollen delivers only sperm S.No. Cytoplasm Mitochondrial gene Target
nuclei and very little cytoplasm during double causing male sterility tissue
fertilization, cytoplasmic organelles and genes are (ploidy)
inherited from the mother only. This is therefore called 1. CMS-T Turf13 Pollen (n)
‘maternal inheritance’. Like maternal effect, maternal 2. CMS-C atp6, atp9 and cox-III Pollen (n)
inheritance show reciprocal difference in F 1, but no
3. CMS-S ORF355 and ORF77 Pollen (n)
segregation is observed for traits controlled by
organellar genes (Fig. 33) in any generation. The key
difference between ‘maternal effect’ and ‘maternal
inheritance’ is in the location of genes controlling the
trait; maternal effect genes are located in nucleus,
while cytoplasmic inheritance is governed by genes
located in mitochondria or plastids.
Chhabra R., Hossain F., Muthusamy V., Baveja A., Mehta V. and Hossain F. 2018. Marker-assisted
B. and Zunjare R. U. 2019. Mapping and validation introgression of rare allele of -carotene hydroxylase
of Anthocyanin1 pigmentation gene for its (crtRB1) gene into elite quality protein maize inbred
effectiveness in early selection of shrunken2 gene for combining high lysine, tryptophan and provitamin
governing kernel sweetness in maize. J. Cereal Sci., A in maize. Plant Breeding, DOI: 10.1111/pbr.12676.
doi: org/10.1016/j.jcs.2019.04.012. Gupta H. S., Raman B., Agrawal P. K., Mahajan V., Hossain
Chinnici J. P. 1999. Using the biochemical pathway to F. and Nepolean T. 2013. Accelerated development
teach the concepts of gene interactions and of quality protein maize hybrid through marker-
epistasis. Am. Biol. Teacher, 61: 207-213. assisted introgression of opaque-2 allele. Plant
Collins J. P. 2018. Gene drives in our future: challenges of Breed., 132: 77-82.
and opportunities for using self-sustaining Haga S. B. 2006. Teaching resources for genetics. Nature
technology in pest and vector management. BMC Reviews Genetics, 7: 223-229.
Proc., 12 (Suppl 8): 9. Hardy G. H. 1908. Mendelian proportions in a mixed
Crick F. 1970. Central dogma of molecular biology. population. Science, 28: 49-50.
Nature, 227: 561-563. Hossain F., Chhabra R., Devi E. L., Zunjare R. U., Jaiswal
Custers R., Casacuberta J. M., Eriksson D., Sagi L. and S. K. and Muthusamy V. 2019. Molecular analysis of
Schiemann J. 2019. Genetic alterations that do or do mutant granule bound starch synthase-I (waxy1)
not occur naturally; consequences for genome edited gene in diverse waxy maize inbreds. 3. Biotech., doi:
organisms in the context of regulatory oversight. org/10.1007/s13205-018-1530-6.
Frontiers in Bioengineering and Biotechnology, doi: Hossain F., Muthusamy V., Pandey N., Vishwakarma A.
10.3389/fbioe.2018.00213. K., Baveja A., Zunjare R., Thirunavukkarasu N., Saha
Das A. K., Chhabra R., Muthusamy V., Chauhan H. S., S., Manjaiah K. M., Prasanna B. M. and Gupta H. S.
Zunjare R. U. and Hossain F. 2019a. Identification of 2018. Marker-assisted introgression of opaque2
novel SNP and InDel variations in the promoter and allele for rapid conversion of elite hybrids into quality
5’ untranslated regions of -tocopherol methyl protein maize. J. Genetics, 97: 287-298. doi: org/
transferase (ZmVTE4) affecting higher accumulation 10.1007/s12041-018-0914-z.
of -tocopherol in maize kernel. Crop J., doi: org/ Hossain F., Nepolean T., Vishwakarma A. K., Pandey N.,
10.1016/j.cj.2019.01.004. Prasanna B. M. and Gupta H. S. 2013. Mapping and
Das A. K., Muthusamy V., Zunjare R. U., Chauhan H. S., validation of microsatellite markers linked to sugary1
Sharma P. K., Bhat J. S., Guleria S. K., Saha S. and and shrunken2 genes in maize (Zea mays L.). J.
Hossain F. 2019b. Genetic variability, genotype × Plant Biochem. Biotechnol., doi: 10.1007/s13562-
environment interactions and combining ability 013-0245-3.
analyses of kernel tocopherols among maize Hossain F., Prasanna B. M., Kumar R. and Singh B. B.
genotypes possessing novel allele of -tocopherol 2008a. Genetic analysis of kernel modification in
methyl transferase (ZmVTE4). Journal of Cereal Quality Protein Maize (QPM) genotypes. Indian J.
Science, doi: org/10.1016/j.jcs.2018.12.018. Genet., 68: 1-9.
Deutch C. E. 2018. Mendel or molecules first: What is the Hossain F., Prasanna B. M., Kumar R. and Singh B. B.
best approach for teaching general genetics? Am. 2008b. The effect of genotype × pollination mode
Biol. Teacher, 80: 264-269. interaction on kernel modification in Quality Protein
Devi E. L., Hossain F., Muthusamy V., Chhabra R., Zunjare Maize (QPM) genotypes. Indian J. Genet., 68: 132-
R., Baveja A., Goswami R., Dosad S. and Jaiswal S. 138.
K. (2017). Microsatellite marker-based characteri- Hossain F., Prasanna B. M., Kumar R., Singh, S. B., Singh
zation of waxy maize inbreds for their utilization in R., Prakash O. and Warsi, M. Z. K. 2007. Genetic
hybrid breeding. 3. Biotech., 7: 316. doi: org/10.1007/ analysis of grain yield and endosperm protein quality
s13205-017-0946-8. in Quality Protein Maize (QPM) lines. Indian J. Genet.,
Ford R. S. 2000. Inheritance of kernel color in corn: 67: 315-322.
Explanations and investigations. Am. Biol. Teacher, Kelliher T., Starr D., Richbourg L. Chintamanani S., Delzer
62: 181-188. B., Nuccio M. L., Green J., Chen Z., McCuiston J.,
Gehring M. and Satyaki P. R. 2017. Endosperm and Wang W., Liebler T., Bullock P. and Martin B. 2017.
imprinting, inextricably linked. Plant Physiol., 173: MATRILINEAL, a sperm-specific phospholipase,
143-154. triggers maize haploid induction. Nature, doi:
Goettel W. and Messing J. 2010. Divergence of gene 10.1038/nature20827.
regulation through chromosomal rearrangements. Kermicle J. L. 1970. Dependence of the R-mottled
BMC Genomics, 11: 1-19. phenotype in maize on mode of sexual transmission.
Goswami R., Zunjare R., Khan S., Baveja A., Muthusamy Genetics, 66: 69-85.
April, 2019] Maize: A model organism for teaching genetics 365
Knott G. J. Doudna J. A. 2018. CRISPR-Cas guides the Pandey N., Hossain F., Kumar K., Vishwakarma A. K.,
future of genetic engineering. Science, 361: 866- Muthusamy V., Saha S., Agrawal P. K., Guleria S. K.
869. and Reddy S. S., Thirunavukkarasu N. and Gupta H.
Kudish P., Schlag E. and Kaplinsky N. J. 2015. An enquiry- S. 2015. Molecular characterization of endosperm-
infused biology laboratory that integrates Mendel’s and amino acids-modifications among quality
pea phenotypes with molecular mechanisms. protein maize inbreds. Plant Breeding, doi: 10.1111/
Bioscience, 41: 10-15. pbr.12328.
Lesnik J. J. 2018. Modeling genetic complexity in the Price C. G., Knee E. M., Miller J. A., Shin D., Mann J., Crist
classroom. Am. Biol. Teacher, 80: 140-142. D. K., Grotewold E. and Brkljacic J. 2018. Following
phenotypes: An exploration of Mendelian Genetics
McClintock B. 1951. Mutable loci in maize. Carnegie using Arabidopsis plants. Am. Biol. Teacher, 80: 291-
Institution of Washington Yearbook, 50: 174-181. 300.
Mehta B., Hossain F., Muthusamy V., Baveja A., Zunjare Pukkila P. J. 2004. Introducing student inquiry in large
R., Jha S. K. and Gupta H. S. 2017a. Microsatellite- introductory genetics classes. Genetics, 166: 11-18.
based genetic diversity analyses of sugary1-,
shrunken2-anddouble mutant-sweet corn inbreds for Reid J. B. and Ross J. J. 2011. Mendel’s genes: toward a
their utilization in breeding programme. Physiology full molecular characterization. Genetics, 189: 3-10.
and Molecular Biology of Plants, doi: 10.1007/ Rhee Y., Sekhon R. S., Chopra S. C. and Kaeppler S.
s12298-017-0431-1. 2010. Tissue culture-induced novel epialleles of a
Mehta B., Hossain F., Muthusamy V., Zunjare R., Sekhar Myb transcription factor encoded by pericarp colour
J. C. and Gupta H. S. 2017b. Analysis the role of 1 in maize. Genetics, 186: 843-855.
sowing- and harvest-time as factors for selecting Rhoades M. M. 1984. The early years of maize genetics.
super sweet (-sh2sh2) hybrids. Indian J. Genet., 77: Annu. Rev. Genet., 18: 1-29.
348-356. Sarika K., Hossain F., Muthusamy V., Zunjare R., Goswami
Mehta B., Hossain F., Muthusamy V., Zunjare R., Sekhar R., Thirunavukkarasu N., Jha S. K. and Gupta H. S.
J. C. and Gupta H. S. 2017c. Analysis of responses 2018a. opaque16, a high lysine and tryptophan
of novel double mutant (sh2sh2/su1su1) sweet corn mutant, does not influence the key physico-
hybrids for kernel sweetness under different sowing- biochemical characteristics in maize kernel. Plos
and harvest-time. Indian J. Agric. Sci., 87: 1543-1548. One, 13(1): e0190945. doi.org/10.1371/journal.
Mendel G. 1866 Experiments in plant hybridization. Sarika K., Hossain F., Muthusamy V., Zunjare R. U., Baveja
Verhandlungen des naturforschenden Vereines in A., Goswami R., Bhat J. S., Saha S. and Gupta H. S.
Brünn. Bd. IV 13 fürdas Jahr 1865, Abhand-lungen, 2018b. Marker-assisted pyramiding of opaque2 and
pp. 3-47. Available at http://www.mendelweb.org/ novel opaque16 genes for further enrichment of
MWarchive.html. lysine and tryptophan in sub-tropical maize. Plant
Mertz E. T., Bates L. S. and Nelson O. E. 1964. Mutant Science, 272: 142-152.
genes that change protein composition and increase Sekhon R. S. and Chopra S. 2009. Progressive loss of
lysine content of maize endosperm. Science, 145: DNA methylation releases Epigenetic gene silencing
279-280. from a tandemly repeated maize Myb gene. Genetics,
Morgan T. H. 1911. Random segregation versus coupling 181: 81-91.
in Mendelian inheritance. Science,34: 384. Sharma M., Cortes-Cruz M., Ahern K. R., McMullen M.,
Muthusamy V., Hossain F., Thirunavukkarasu N., Brutnell T. P. and Chopra S. 2011. Identification of
Choudhary M., Saha S., Bhat J. S., Prasanna B. M. the Pr1 gene product completes the anthocyanin
and Gupta H. S. 2014. Development of -carotene biosynthesis pathway of maize. Genetics, 188: 69-
rich maize hybrids through marker-assisted 79.
introgression of -carotene hydroxylase allele. Plos Shull G. H. 1948. What Is “Heterosis”? Genetics, 33: 439-
One, 9(12): e113583. doi: 10.1371/journal.pone. 446.
0113583.
Shull G. H. 1952. Beginnings of the heterosis concept. In
Naqvi S., Zhu C., Farre G., Sandmann G., Capell T. and Heterosis, Gowen, J. W., Ed., Ames, IA: Iowa State
Christou P. 2011. Synergistic metabolism in hybrid College Press, 14-48.
corn indicates bottlenecks in the carotenoid pathway
and leads to the accumulation of extraordinary levels Smith M. K. and Wood W. B. 2016. Teaching genetics:
of the nutritionally important carotenoid zeaxanthin. Past, present, and future. Genetics, 204: 5-10.
Plant Biotechnol. J., 9: 384-393. Stinard P. S., Robertson D. S. and Schnable P. S. 1993.
Neuffer M. G., Coe E. H. and Wessler S. R. 1997. Mutants Genetic isolation, cloning, and analysis of a Mutator-
of maize. Cold Spring Harbor Laboratory Press, Cold induced, dominant antimorph of the maize amylose
Spring Harbor, NY. extender1 locus. The Plant Cell, 5: 1555-1566.
366 Firoz Hossain et al. [Vol. 79, No. (1) Suppl.
Vasal S. K., Villegas E., Bajarnason M., Gelaw B. and mutant orange pericarp is defective in duplicate
Geirtz P. 1980. Genetic modifiers and breeding genes for tryptophan synthase . The Plant Cell, 4:
strategies in developing hard endosperm opaque-2 711-719.
materials. In Improvement of quality traits for silage Zhang H., Chen W. and Sun K. 2017. Mendelism: New
use (Ed. W. G. Pollmer and R. H. Philips), pp. 37-71. insights from Gregor Mendel’s lectures in Brno.
Martinus Nijhoff Publishers, Hague. Genetics, 207: 1-8.
Weeden N. F. 2016. Are Mendel’s data reliable? The Zunjare R. U, Hossain F., Muthusamy M., Baveja A.,
perspective of a pea geneticist. J. Heredity, 107: 635- Chauhan H. S., Bhat J. S., Saha S. and Gupta H. S.
646. 2018. Development of biofortified maize hybrids
Weinberg W. 1908. Über den Nachweis der Vererbung through marker-assisted stacking of -carotene
beim Menschen. Jahreshefte des Vereins hydroxylase, lycopene-cyclase and opaque2 genes.
Varterländische Naturkdunde in Württemberg, Frontiers in Plant Science, doi: 10.3389/fpls.2018.
64: 369-382. 00178.
Whitt S. R., Wilson L. M., Tenaillon M. I., Gaut B. S. and Zunjare R. U., Hossain F., Muthusamy V., Baveja A.,
Buckler E. S. 2002. Genetic diversity and selection Chauhan H. S., Thirunavukkarasu N., Saha S. and
in the maize starch pathway. PNAS, 99: 12959- Gupta H. S. 2017. Influence of rare alleles of -
12962. carotene hydroxylase (crtRB1) and lycopene epsilon
Wright A. D., Moehlenkamp C. A, Perrot G. H., Neuffer cyclase (lcyE) genes on accumulation of provitamin
M.G. and Coneb K. C. 1992. The maize auxotrophic A carotenoids in maize kernels. Plant Breed., doi:
10.1111/pbr.12548.