Problems with the RunSlingshot() function #242
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I had the same problem, did you solve it? |
2 similar comments
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I had the same problem, did you solve it? |
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I had the same problem, did you solve it? |
lineages_layers <- SCP::LineagePlot(srt.IC, lineages = c("Lineage1","dpt_pseudotime" ),return_layer = T)
lineages_layers <- lineages_layers[!names(lineages_layers) %in% c("lab_layer")]
gg <- SCP::CellDimPlot(srt.IC, group.by = "group.cellchat",pt.size = 3,
reduction = "UMAP",show_stat = T,palcolor = scPalette(3),
label = F, label_insitu = F)
pp <- gg+
# scale_color_manual(values = scPalette(3))+
guides(color = guide_legend(
title = "Groups",
override.aes = list(color=scPalette(3),size=4)))+
ggnewscale::new_scale_colour()+lineages_layersI can't get the figure, but solve the problem a lit bit. My cellgroup number is 3，so I define my length=3 The problem may be caused by ggnewscale package. Best wishes. |
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It appears when I run the RunSlingshot() function using my own data:
1: No shared levels found between
names(values)of the manual scale and the data's fill values.2: No shared levels found between
names(values)of the manual scale and the data's fill values.and I can't get the figure.
when I use the data("pancreas_sub"), the same question arises here：
1: No shared levels found between
names(values)of the manual scale and the data's fill values.2: No shared levels found between
names(values)of the manual scale and the data's fill values.How do I fix this?
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