✂️ ⚡ Rapid haploid variant calling and core genome alignment

Strelka2 germline and somatic small variant caller

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

tools for genetic genealogy and the analysis of consumer DNA test results

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

A fast 23andMe DNA parser and inferrer for Python

tools for reading, writing, merging, and remapping SNPs

Find causal cell-types underlying complex trait genetics

A fast 23andMe genome text file parser, now superseded by arv

Wrapper to a number of SNP web APIs

Population Genetics in Julia

Compressed storage for SNP data

Pan-genomic sequence analysis

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

Datastructures and algorithms for working with genetic variation

An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.

A tool for simulating random mutations in any genome

An Efficient Swiss Army Knife for Population Genomic Analyses in R

Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)