A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

GWAS summary statistics files QC tool

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

TWAS-pipeline

BWMR (Bayesian Weighted Mendelian Randomization)

Older repo for MRLocus. See new website for software usage guide:

Tool for integrative gene-based association analysis using GWAS summary stats

Code and simulations using interaction-LD score regression

Software to infer latent pleiotropic components from GWAS summary data

Format of GWAS summary statistics.

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

MultiVariate Polygenic Mixture Model

Make interactive LocusZoom plots from a local GWAS file

Script for designing a manhattan plot.

Mendelian Randomization approach using Cross Ancestral Model

Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.

Polygenic risk modeling with latent trait-related genetic components

tool for probabilistic correction of Winner's Curse in two-stage GWAS

R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".